Table 4 Top ten Gene Ontology categories using GOseq adjusted for total read count bias
From: Gene ontology analysis for RNA-seq: accounting for selection bias
GOID | Term | Ontology | Rank standard | Rank GOseq | Median read count of genes in category |
|---|---|---|---|---|---|
GO:0016020 | Membrane | CC | 16 | 1 | 91 |
GO:0005886 | Plasma membrane | CC | 96 | 2 | 50 |
GO:0005887 | Integral to plasma membrane | CC | 313 | 3 | 36 |
GO:0005576 | Extracellular region | CC | 4,310 | 4 | 18 |
GO:0015020 | Glucuronosyl transferase activity | MF | 388 | 5 | 10 |
GO:0005783 | Endoplasmic reticulum | CC | 6 | 6 | 197 |
GO:0016021 | Integral to membrane | CC | 179 | 7 | 68 |
GO:0006470 | Protein amino acid dephosphorylation | BP | 31 | 8 | 224 |
GO:0045944 | Positive regulation of transcription from RNA polymerase II promoter | BP | 39 | 9 | 133 |
GO:0007049 | Cell cycle | BP | 14 | 10 | 202 |