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Table 3 Summary of BLASTX search analysis of catfish ESTs

From: Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

Database

Catfish hits*

Unique protein

% of total unique proteins

Unique gene

NR

41,311

22,642

  

Uniprot

34,860

17,948

  

Refseq/Ensembl

    

   Zebrafish

39,546

14,988

54% of 27,996

12,470

   Medaka

36,641

13,588

56% of 24,461

12,920

   Tetraodon

34,418

13,132

57% of 23,118

10,322

   Human

33,847

12,621

33% of 38,342

9,668

   Mouse

33,594

12,267

35% of 35,236

11,518

   Chicken

31,646

11,059

50% of 22,194

8,717

Cumulative unique (E-10)†

42,668

16,439

 

14,776

  1. *Number of significant (E-10) alignments using all catfish unique sequences as queries to search the listed databases. †Cumulative unique totals were derived from the sum of unique gene/protein identities across all listed species.