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Table 3 Distribution of common repeat sequences

From: Genomic characterization of the Yersinia genus

 

ERIC

(127 bp)

YPAL

(167 bp)

Kristensenii39

(142 bp)

IS1541C

(708 bp)

Aldovae3

(154 bp)

E. coli

0

3

5

0

5

Y. pestis

54

43

33

61

38

Y. pseudotuberculosis

55

52

29

5

36

Y. enterocolitica

63

144

100

3

75

Y. aldovae

6

84

46

0

40

Y. bercovieri

9

45

6

9

13

Y. frederiksenii

0

57

6

0

5

Y. intermedia

2

91

48

0

43

Y. kristensenii

2

99

70

0

59

Y. mollaretii

6

62

26

0

20

Y. rohdei

0

37

8

0

7

Y. ruckeri

45

2

0

0

2

  1. Three of the repeat sequences found using de novo searches matched the known repeat elements ERIC, YPAL, and IS1541C and are identified as such. Kristensenii39 and Aldovae3 are elements found from de novo searches in the Y. kristensenii and Y. aldovae genomes, respectively.