ID | T42 | T38 | T36 | T36; QRL(Q10) = 28 |
---|
Total contigs | 6,945 | 8,637 | 19,118 | 39,488 |
N50 contig | 24,566 (N/A) | 10,706 | 2,902 | 1,299 |
Total DNA (bp) | 26,721,397 | 26,466,756 | 25,854,719 | 24,812,690 |
EST analysis* | 6,585/29 | 6,204/24 | 4,657/11 | 2,923/9 |
- *EST alignments are given as: Complete alignments/Misassemblies (see Materials and methods). Velvet assemblies were generated from Illumina GAii read data. Assembly T42 was generated from the untrimmed, no-call and shadow filtered Illumina PE reads. Assemblies T38 and T36 were generated by trimming the last 4 and 6 bp, respectively, from the T42 read set. Assembly T36, QRL(Q10) = 28 was generated with the T36 read set from which reads were removed if they failed the QRL(Q10) = 28 quality region length filtering (see Materials and methods).