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Table 2 List of 12 linked sets involving the duplication of more than one gene locus in S. cerevisiae with K S < 0.35

From: Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans

Linked set

Paralogous set A

Paralogous set B

K S

Average K S

Structural categories

Chromosomal location

Duplication span (bp)

1

YLR154C-H

YLR157C-C

0.0000

0.0000

Complete

XII/XII

7,167

 

YLR155C

YLR158C

0.0000

 

Complete

  
 

YLR156W

YLR159W

0.0000

 

Complete

  
 

YLR156C-A

YLR159C-A

0.0000

 

Complete

  
 

YLR157C

YLR160C

0.0000

 

Complete

  
 

YLR157W-D

YLR161W

0.0000

 

Partial

  

2

YHR053C

YHR055C

0.0000

0.0000

Complete

VIII/VIII

1,816

 

YHR054C

YHR056C

0.0000

 

Partial

  

3

YCL065W

YCR041W

-

0.0019

Chimeric

III/III

2,509

 

YCL066W

YCR040W

0.0000

 

Complete

  
 

YCL067C

YCR039C

0.0000

 

Complete

  
 

YCL068C

YCR038C

0.0058

 

Chimeric

  

4

YNL033W

YNL019C

0.0000

0.0077

Complete

XIV/XIV

4,247

 

YNL034W

YNL018C

0.0450

 

Complete

  

5

YAR073W/75W

YHR216W

0.1074

0.0087

Complete

I/VIII

7,445

 

YAR071W

YHR215W

0.0069

 

Complete

  
 

YAR070C

YHR214C-B

0.0000

 

Complete

  
 

YAR069C

YHR214C-D

0.0000

 

Complete

  

6*

YKR106W

YCL073C

0.0359

0.0243

Complete

XI/III

6,928

 

YKR105C

YCL069W

0.0127

 

Complete

  

7

YDR543C

YER188C

0.0608

0.0377

Complete

IV/V

7,481

 

YDR545W

YER189W

0.0147

 

Complete

  

8

YJR162C

YNL337W

0.0000

0.0409

Complete

X/IV

2,916

 

YJR161C

YNL336W

0.0818

    

9

YCR107W/AAD3

YOL165C

0.0430

0.0430

Complete

III/XV

5,952

 

YCR108C

YOL166W

-

 

Complete

  

10

YAR050W

YHR211W

0.3081

0.0449

Complete

I/VIII

19,614

 

YAR060C

YHR212C

0.0000

 

Complete

  
 

YAR061W

YHR212W-A

0.0000

 

Complete

  
 

YAR062W

YHR213W

0.0000

 

Complete

  
 

YAR064W

YHR213W-B

0.0000

 

Complete

  
 

YAR066W

YHR214W

0.0066

 

Complete

  
 

YAR068W

YHR214W-A

0.0000

 

Complete

  

11

YNR073C

YEL070W

0.0482

0.0817

Complete

XIVI/V

4,611

 

YNR072C

YEL069C

0.1152

 

Complete

  

12

YAR033W

YGL051W

0.0280

0.0973

Complete

I/VII

6,461

 

YAR031W

YGL053W

0.1667

 

Complete

  
  1. Columns 2 and 3 list the systematic names of the group of loci representing each paralogous set as per the Saccharomyces Genome Database. Column 4 lists the synonymous-site divergence (K S ) between two paralogs within a linked set as computed by the Nei and Gojobori method with a correction for multiple hits. Column 5 presents the averaged K S value for all paralogous pairs within a linked set. Column 6 lists the particular category of structural resemblance (complete, partial or chimeric) for each duplicate pair. Column 7 lists the chromosomal location of paralogs 1 and 2, respectively. Column 8 provides a minimal estimate of the length of the duplicated region, based on current visual inspection of the extent of sequence homology across the paralogs' coding and flanking regions. *A linked set that has been classified as an ohnolog resulting from a WGD event. Dashes indicate an inability to compute synonymous divergence between the paralogs due to an altered reading frame in one or both gene copies.