Table 2 COG distribution of the T. gammatolerans proteome
COG category | Total number | MS-proof number | Total percentage | MS-proof percentage | MS-proof in category percentage |
|---|---|---|---|---|---|
A: RNA processing and modification | 1 | 1 | 0.05 | 0.05 | 100 |
T: Signal transduction mechanisms | 18 | 15 | 0.83 | 0.7 | 83.33 |
J: Translation, ribosomal structure and biogenesis | 163 | 119 | 7.56 | 5.52 | 73.01 |
F: Nucleotide transport and metabolism | 54 | 38 | 2.5 | 1.76 | 70.37 |
C: Energy production and conversion | 129 | 90 | 5.98 | 4.17 | 69.77 |
D: Cell cycle control, cell division, chromosome partitioning | 19 | 13 | 0.88 | 0.6 | 68.42 |
E: Amino acid transport and metabolism | 115 | 78 | 5.33 | 3.62 | 67.83 |
O: Posttranslational modification, protein turnover, chaperones | 62 | 42 | 2.87 | 1.95 | 67.74 |
N: Cell motility | 18 | 12 | 0.83 | 0.56 | 66.67 |
B: Chromatin structure and dynamics | 3 | 2 | 0.14 | 0.09 | 66.67 |
H: Coenzyme transport and metabolism | 65 | 43 | 3.01 | 1.99 | 66.15 |
I: Lipid transport and metabolism | 23 | 14 | 1.07 | 0.65 | 60.87 |
L: Replication, recombination and repair | 63 | 38 | 2.92 | 1.76 | 60.32 |
K: Transcription | 98 | 59 | 4.54 | 2.74 | 60.2 |
Q: Secondary metabolite biosynthesis, transport and catabolism | 14 | 8 | 0.65 | 0.37 | 57.14 |
G: Carbohydrate transport and metabolism | 92 | 52 | 4.27 | 2.41 | 56.52 |
R: General function prediction only | 289 | 150 | 13.4 | 6.95 | 51.9 |
M: Cell wall/membrane/envelope biogenesis | 41 | 20 | 1.9 | 0.93 | 48.78 |
S: Function unknown | 185 | 88 | 8.58 | 4.08 | 47.57 |
U: Intracellular trafficking, secretion, and vesicular transport | 15 | 7 | 0.7 | 0.32 | 46.67 |
V: Defense mechanisms | 21 | 8 | 0.97 | 0.37 | 38.1 |
P: Inorganic ion transport and metabolism | 81 | 26 | 3.76 | 1.21 | 32.1 |
No COGs | 588 | 178 | 27.26 | 8.25 | 30.27 |