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Table 2 Reactions required to violate the automated reversibility rules

From: iBsu1103: a new genome-scale metabolic model of Bacillus subtilisbased on SEED annotations

Reaction name

Equation

Δ r G'm(kcal/mol)

CMP-lyase

2-p-4-CDP-2-m-eryth => CMP + 2-m-eryth-2-4-cyclodiphosphate

22.7

Dihydroneopterin aldolase

Dihydroneopterin => Glycolaldehyde + 2-Amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine

10.7

Tetrahydrodipicolinate acetyltransferase

H2O + Acetyl-CoA + Tetrahydrodipicolinate => CoA + L-2-acetamido-6-oxopimelate

11.4

Dihydroorotase

H+ + N-carbamoyl-L-aspartate => H2O + L-dihydroorotate

5.3

Phosphoribosyl aminoimidazole synthase

ATP + 5'-Phosphoribosylformylglycinamidine => ADP + Phosphate + H+ + Aminoimidazole ribotide

16.6

Sulfate adenylyltransferase

ATP + Sulfate + H+ => Diphosphate + Adenylyl sulfate

12.6