Table 1 Software dependencies
From: GMODWeb: a web framework for the generic model organism database
Package name | Version | GMOD tool | Description |
|---|---|---|---|
postgresql-server | Â | Â | The PostgreSQL database server |
postgresql | ≥7.3 |  | Client libraries for PostgreSQL |
perl-Apache-ParseFormData | Â | Â | A Perl library for accessing form data in mod_perl |
perl-Class-Base | Â | Â | A Perl base class for other modules |
perl-Class-DBI | Â | Â | A Perl tool for abstracting database access |
perl-Class-DBI-ConceptSearch | Â | Â | A flexible Perl module for searching databases |
perl-Class-DBI-Pager | Â | Â | A Perl tool for breaking database query results into pages |
perl-Class-DBI-Pg | Â | Â | A PostgreSQL driver for Class::DBI |
perl-Class-DBI-Plugin-Type | Â | Â | A Perl tool for determining data type information |
perl-DBD-Pg | Â | Â | A PostgreSQL driver for Perl |
perl-DBI | Â | Â | A generic database interface for Perl |
perl-Log-Log4perl | Â | Â | Logging software for Perl applications |
perl-SQL-Translator | Â | Â | A Perl tool for translating SQL schema into an object model |
perl-Template-Toolkit | Â | Â | A template engine for Perl |
perl-XML-LibXML | Â | Â | An XML parsing library for Perl |
perl-Lucene | Â | Â | A Lucene search engine interface for Perl |
perl-Apache2-SOAP | Â | Â | Automatic SOAP bindings for mod_perl |
perl-Cache-Cache | Â | Â | A Perl tool used to cache web pages in GMOD-Web |
httpd | Â | Â | The Apache webserver |
mod_perl | ≥2.0.1 |  | A plugin for Apache that executes Perl code |
perl | Â | Â | An interpreted language used throughout the Turnkey/GMODWeb project |
gbrowse | Â | Yes | A genome feature browser web application from the GMOD project |
textpresso | Â | Yes | A literature search web application from the GMOD project |
AmiGO | Â | Yes | An ontology browser web application from the GMOD project |
chado | Â | Yes | A sample Chado database from the GMOD project |
chado-schema | Â | Yes | The Chado schema from the GMOD project |
gmod-web | ≥1.3 | Yes | A GMODWeb site generated with Turnkey for the Chado schema |
turnkey | ≥1.3 |  | The website generation tool used to create GMODWeb |