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Table 1 Genome-wide databases of candidate transcription factor binding sites

From: ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?

Number

Database properties

Number of genes

Number of regions

Number of binding sites

1

Human-mouse conserved regions, 10 kilobases 5' of TSS

8,759

22,582

1,858,800

2

(1) + limited to binding sites occurring both in the human and mouse CNS

8,759

22,582

878,338

3

(2) + correct for possible mouse TSS differences (add 100 kilobases of mouse sequence 5' and 3')

11,653

35,021

1,316,927

  1. CNS, conserved noncoding sequence; TSS, transcription start site.