From: Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays
 | Drop rate |  | |
---|---|---|---|
Dataset | BRLMM | CRLMM | Relative rate |
Affymetrix high-quality XBA arrays | 0.0115 | 0.00575 | 2.00 |
Affymetrix high-quality HIND arrays | 0.0446 | 0.0228 | 1.95 |
Affymetrix high-quality STY arrays | 0.0873 | 0.0171 | 5.10 |
Broad Institute first-pass STY arrays | - | 0.241 | - |
Affymetrix first-pass STY arrays | - | 0.110 | - |
Affymetrix high-quality NSP arrays | 0.086 | 0.0347 | 2.48 |
Broad Institute first-pass NSP arrays | - | 0.180 | - |
Affymetrix first-pass NSP arrays | - | 0.231 | - |
Chakravarti XBA replicate arrays | - | 0.110 | - |
Chakravarti NSP replicate arrays | 0.42 | 0.0565 | 7.43 |