Figure 2
From: Genome assembly forensics: finding the elusive mis-assembly
Mate-pair signatures for collapse style mis-assemblies. (a) Two copy tandem repeat R shown with properly sized and oriented mate-pairs. (b) Collapsed tandem repeat shown with compressed and mis-oriented mate-pairs. (c) Two copy repeat R, bounding unique sequence B, shown with properly sized and oriented mate-pairs. (d) Collapsed repeat shown with compressed and mis-linked mate-pairs.