|
UCR
|
Ultraconserved region
|
[26]
|
≥200 bp 100% conserved between human and mouse
|
| | |
[5]
|
Nontranscribed, ≥50 bp ≥95% conserved between human and mouse, and at least partially aligned to fugu
|
|
UCE
|
Ultraconserved element
|
[89]
|
≥100 bp 100% conserved between human and mouse
|
|
CNS
|
Conserved noncoding sequence
|
[90]
|
Nongenic, human:mouse, >100 bp and with ≥70% identity
|
|
CNE
|
Conserved noncoding element
|
[6]
|
Nontranscribed, >100 bp human:fugu alignments with MegaBlast
|
|
HCNR
|
Highly conserved noncoding region
|
[7]
|
Visual inspection of mouse: Xenopus:zebrafish alignments
|
| | |
[91]
|
Same as [5]
|
|
HCNE
|
Highly conserved noncoding element
|
[28]
|
Windows ≥50 bp that do not overlap coding regions and for which the probability of being under purifying selection, given the conservation score, is ≥95%
|
|
CNC
|
Conserved noncoding region (?)
|
[38]
| |
|
CNG
|
Conserved nongenic sequence
|
[92]
|
Nontranscribed, human:mouse BLAST with an e-value < 10-20 and similarity ≥98%
|
|
HCE
|
Highly conserved element
|
[46]
|
UCE from Bejerano et al. [26] + UCR from Sandelin et al. [5] + UCR from Sandelin et al. [5] + CNE from Woolfe et al. [6]
|
