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Table 3 Substitution score matrices for human-chimp and human-rhesus alignments

From: Fast-evolving noncoding sequences in the human genome

Alignment A C G T
Human-chimp 90 -330 -236 -356
  -330 100 -318 -236
  -236 -318 100 -330
  -356 -236 -330 90
Human-rhesus 87 -226 -129 -255
  -226 100 -212 -129
  -129 -212 100 -226
  -255 -129 -226 87