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Table 3 Orthology and synteny with Anopheles gambiae and Drosophila melanogaster

From: Analysis of 14 BAC sequences from the Aedes aegyptigenome: a benchmark for genome annotation and assembly

Aedes aegypti Anopheles gambiae Drosophila melanogaster
BAC number Transcript number Aedes transcripts Ortholog E-value Chromosome Syntenic block Ortholog E-value Syntenic block
1 1 AAEL013103 ENSANGG00000021076 3.8E-133 3R-37D Yes CG31938 9.5E-094 --
  2 AAEL013088 ENSANGG00000026626 5.5E-009 3R-37D Yes - - -
  3 AAEL013092 ENSANGG00000011837 0.0E+0.0 3R-37D Yes CG10413 0.0E+0.0 -
  4 AAEL013582 ENSANGG00000023798 1.1E-035 3R-37D Yes CG11247 1.1E-128 -
  5 AAEL015006 ENSANGG00000011941 1E-106 3R-37D Yes CG3661 2.2E-104 -
  6 AAEL013098 ENSANGG00000002369 0.0E+0.0 3R-37D Yes CG7961 0.0E+0.0 -
3 7 AAEL009524 ENSANGG00000015193 7.3E-281 2R-10C NA CG8696 7.2E-226 NA
4 8 AAEL008104 1 to many 9.4E-058 GW - 1 to many 8.7E-040 -
  9 AAEL008110 ENSANGG00000011807 3E-154 2R-12B Yes CG4832 2.5E-078 -
  10 AAEL008114 ENSANGG00000009472 4.4E-037 GW - CG12752 1.6E-026 -
  11 AAEL008115 ENSANGG00000011761 2.2E-108 2R-12B Yes CG11025 3.2E-037 -
  12 AAEL008103 ENSANGG0000012462 7.90E-061 2R-12B - CG7808 2.8E-073 -
  13 AAEL008100 ENSANGG00000009215 1.4E-053 2R-8B - CG1078 3E-040 -
5 14 AAEL014561 ENSANGG00000022738 3.0E-009 3R-32C - - - -
  15 AAEL014559 ENSANGG00000010922/ENSANGG00000022179 3.3E-068 3R-35C - - - -
6 16 AAEL014711 ENSANGG00000005482 0.0E+0.0 3R-29B Yes CG8815 0.0E+0.0 -
  17 AAEL014712 ENSANGG00000022484 8.9E-199 3R-29B Yes CG15084 8.3E-170 -
  18 AAEL014709 ENSANGG00000007515 0.0E+0.0 3R-29B Yes CG15100 0.0E+0.0 -
7 19 AAEL006423 ENSANGG00000020489 1.1E-006 2L-20C - CG40120 6.1E-006 -
  20 No transcript ENSANGG00000011708 3.5E-026 GW - CG33803 6.9E-028 -
  21 AAEL006424 ENSANGG00000027449 3.0E-062 3R-30C Yes - - -
  22 AAEL006417 ENSANGG00000020969 2.6E-056 3R-30C Yes - - -
8 23 AAEL006019 ENSANGG00000025048 8.0E-073 2L-20C NA CG9907 8.9E-174 NA
9 24 AAEL010573 ENSANGG00000015129 3.6E-060 2R-19B Yes CG6684 2E-050 -
  25 AAEL010594 ENSANGG00000014580 3.7E-107 2R-19B Yes CG32418 2E-032 -
  26 AAEL010587 ENSANGG00000014498 2E-192 2R-19B Yes CG9590 1E-083 -
  27 AAEL010575 ENSANGG00000014455 2E-192 2R-19B Yes CG11837 3.6E-196 -
  28 AAEL000054 ENSANGG00000002208 0.0E+0.0 2R-12E - CG8651 0.0E+0.0 -
  29 AAEL010595 ENSANGG00000010690 0.0E+0.0 2L-26A - CG16982 1.7E-240 -
10 30 AAEL007897 ENSANGG0000016631 5.1E-194 3R-29B Yes CG14928 6E-164 -
  31 AAEL007893 ENSANGG00000018850 1.3E-175 2R-12C - CG31548 2.3E-137 -
  32 AAEL007907 ENSANGG00000015978 1.7E-200 3R-29B Yes CG4629 1.3E-144 -
11 33 AAEL002503 ENSANGG00000015084 3.8E-092 X-1B Yes CG1989 3E-082 Yes
  34 AAEL002532 ENSANGG00000015036 4.4E-250 X-1B Yes CG3707 6.3E-285 -
  35 AAEL002534 ENSANGG00000012432 6.5E-186 X-5C - CG17521 1.9E-167 Yes
  36 AAEL002523 ENSANGG00000015081 7.3E-065 X-1B Yes CG1660 6.8E-051 -
12 37 AAEL001205 ENSANGP00000016497 0.0E+0.0 3R-33B - CG4244 0.0E+0.0 -
  38 AAEL001215 SNAP_00000004435 9.9E-123 3R-33B Yes CG4230 2E-055 -
  39 AAEL001215 ENSANGP00000023803 0.0E+0.0 3R-33B Yes CG7269 1.2E-299 -
  40 AAEL001198 ENSANGP00000023805 0.0E+0.0 3R-29B - CG8451 4E-236 -
  41 AAEL001201 ENSANGP00000016633 9.8E-041 3R-33B Yes - - -
  42 AAEL001210 ENSANGP00000016606 1.9E-060 3R-33B Yes CG8680 2.3E-052 -
13 43 AAEL008780 ENSANGP00000021694 1.9E-079 2L-21C Yes CG2071/CG1304 3.1E-058 -
  44 AAEL008781 ENSANGP00000021694 4.6E-071 2L-21C Yes CG2071/CG1304 3.5E-048 -
  45 AAEL008769 ENSANGP00000021694 1.9E-088 2L-21C Yes CG2071/CG1304 1.1E-064 -
  46 AAEL008778 ENSANGP00000021867 1.6E-103 2L-21C Yes - - -
14 47 AAEL005065 ENSANGP00000018910 6E-159 2R-16C Yes CG6746 3.7E-134 -
  48 AAEL005085 ENSANGP00000018909 6.3E-084 2R-16C Yes CG10652 2.5E-078 -
  49 AEL005237 ENSANGP00000018845 4.9E-130 2R-16C Yes CG1298 2.4E-095 -
  50 AAEL005229 ENSANGP00000019493 3.7E-122 2R-16C Yes CG6746 8.3E-090 -
  51 AAEL005218 ENSANGG00000016433 7.7E-151 2R-16B Yes CG10624 1.9E-121 -
  1. Orthology was determined for each transcript from all 14 BACs. The presence of synteny was also determined for orthologous blocks of transcripts when more than one transcript was present on the BAC clone.