BAC number | Transcript number | Aedes transcript | Supercontig | Contig | Sequencing of cDNA | Differences in annotation between manual annotation (MA) and gene build | Replicated transcript in Aedes assembly | |||
---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  |  |  | Aedes transcript | Supercontig | Contig | Notes |
1 | 1 | AAEL013103 | 1.789 | 24718 | - | - | AAEL014498 | 1.1137 | 29191 | - |
 | 2 | AAEL013088 | 1.789 | 24718 | - | - | AAEL014499 | 1.1137 | 29191 | - |
 | 3 | AAEL013092 | 1.789 | 24718 | - | - | AAEL014500 | 1.1137 | 29189 | - |
 | 4 | AAEL013582 | 1.875 | 25903 | Identical | Longer 5' in MA | AAEL015005 | 1.1393 | 31331 | 5' end of transcript matched MA |
 |  |  |  |  |  |  | AAEL013099 | 1.789 | 24718 | 3' end of transcript matched MA |
 | 5* | AAEL015006 | 1.1393 | 31331 | Identical | - | AAEL013097 | 1.789 | 24718 | Identical to AAEL013097 |
 |  |  |  |  |  |  | AAEL013583 | 1.875 | 25903 | Identical to AAEL013583 |
 | 6 | AAEL013098 | 1.789 | 24719 | - | Only 3' coding region lines up | AAEL013098 | 1.789 | 24719 | Only 3' coding region lines up |
3 | 7* | AAEL009524 | 1.403 | 16729 | - | - | AAEL000392 | 1.7 | 624 | - |
4 | 8 | AAEL008104 | 1.301 | 13837 | - | - | - | - | - | - |
 | 9 | AAEL008110 | 1.301 | 13837 | Identical | Different intron/exon structure | - | - | - | - |
 | 10 | AAEL008114 | 1.301 | 13837 | Identical | 3' longer in MA | - | - | - | - |
 | 11 | AAEL008115 | 1.301 | 13837 | - | - | - | - | - | - |
 | 12 | AAEL008103 | 1.301 | 13837 | Identical | - | - | - | - | - |
 | 13 | AAEL008100 | 1.301 | 13837 | - | - | - | - | - | - |
5 | 14* | AAEL014561 | 1.1166 | 29449 | Identical | - | Transcript missing | 1.216 | 10858 | - |
 | 15 | AAEL014559 | 1.1166 | 29447 | Identical | - | AAEL006682 | 1.216 | 10863 | - |
6 | 16* | AAEL014711 | 1.1232 | 30069 | Identical | Different intron/exon structure | AAEL014491 | 1.1132 | 29135 | - |
 | 17 | AAEL014712 | 1.1232 | 30070 | - | - | AAEL014495 | 1.1132 | 29137 | - |
 | 18 | AAEL014709 | 1.1232 | 30070 | Identical | - | AAEL014494 | 1.1132 | 29136 | - |
7 | 19 | AAEL006423 | 1.204 | 10417 | - | - | - | - | - | - |
 | 20 | No transcript | 1.204 | 10417 | - | Similar to AAEL003685 | - | - | - | - |
 | 21* | AAEL006424 | 1.204 | 10417 | Identical | - | - | - | - | - |
 | 22 | AAEL006417 | 1.204 | 10417 | Identical | - | - | - | - | - |
8 | 23* | AAEL006019 | 1.186 | 9724 | Identical | - | AAEL008297 | 1.312 | 14138 | - |
9 | 24* | AAEL010573 | 1.488 | 18854 | Identical | - | AAEL000068 | 1.1 | 48 | - |
 | 25 | AAEL010594 | 1.488 | 18854 | Identical | - | AAEL000046 | 1.1 | 48 | - |
 | 26 | AAEL010587 | 1.488 | 18855 | Identical | - | AAEL000020 | 1.1 | 48 | - |
 | 27 | AAEL010575 | 1.488 | 18855 | Identical | - | AAEL000076 | 1.1 | 48 | - |
 | 28 | AAEL000054 | 1.1 | 48 | - | - | AAEL010578 | 1.488 | 18855 | - |
 | 29 | AAEL010595 | 1.488 | 18855 | - | - | - | - | - | - |
10 | 30 | AAEL007897 | 1.288 | 13401 | Identical | Extra 3' exon in MA | - | - | - | - |
 | 31 | AAEL007893 | 1.288 | 13401 | - | - | - | - | - | - |
 | 32 | AAEL007907 | 1.288 | 13401 | - | - | - | - | - | - |
11 | 33 | AAEL002503 | 1.59 | 3864 | - | - | - | - | - | - |
 | 34 | AAEL002532 | 1.59 | 3866 | Identical | 3' exon absent in MA | - | - | - | - |
 | 35 | AAEL002534 | 1.59 | 3863 | - | - | - | - | - | - |
 | 36 | AAEL002523 | 1.59 | 3864 | - | - | - | - | - | - |
12 | 37 | AAEL001205 | 1.25 | 1764 | - | Longer 5' in MA | - | - | - | - |
 | 38 | AAEL001215 | 1.25 | 1764 | Identical | Longer 3' in MA | - | - | - | - |
 | 39 | AAEL001215 | 1.25 | 1764 | Identical | - | - | - | - | - |
 | 40 | AAEL001198 | 1.25 | 1761 | - | - | - | - | - | - |
 | 41 | AAEL001201 | 1.25 | 1764 | - | - | - | - | - | - |
 | 42 | AAEL001210 | 1.25 | 1764 | - | - | - | - | - | - |
13 | 43 | AAEL008780 | 1.348 | 15270 | - | - | AAEL001693 | 1.39 | 2713 | - |
 | 44 | AAEL008781 | 1.348 | 15269 | - | - | AAEL001703 | 1.39 | 2712 | - |
 | 45 | AAEL008769 | 1.348 | 15269 | - | - | AAEL001701 | 1.39 | 2711 | - |
 | 46 | AAEL008778 | 1.348 | 15269 | - | - | AAEL001681 | 1.39 | 2711 | - |
14 | 47 | AAEL005065 | 1.140 | 7865 | - | - | AAEL005223 | 1.146 | 8136 | - |
 | 48 | AAEL005085 | 1.140 | 7866 | - | - | AAEL005220 | 1.146 | 8136 | - |
 | 49 | AEL005237 | 1.146 | 8136 | - | - | AAEL005088 | 1.140 | 7865 | - |
 | 50 | AAEL005229 | 1.146 | 8136 | - | - | AAEL005059 | 1.140 | 7865 | - |
 | 51 | AAEL005218 | 1.146 | 8136 | - | - | No gene build annotation | 1.140 | 7865 | - |