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Table 3 Assembly statistics

From: A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

 

Reference sequence CSAV 2.0 (this work)

Original WGS assembly

Non-redundant 1.0

Total length (Mb)

174

402

157

Scaffold N50 (kb)

1,779

496

988

Contig N50 (kb)

116

17

47

Number of scaffolds

374

33,623

446

Number of scaffolds >3 kb

374

4,123

444

Number of contigs

4,620

66,800

8,183

Gap bases in scaffolds

1.7%

5.6%

4.3%

  1. kb, kilobases; Mb, megabases; WGS, whole-genome shotgun.