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Table 3 Assembly statistics

From: A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

  Reference sequence CSAV 2.0 (this work) Original WGS assembly Non-redundant 1.0
Total length (Mb) 174 402 157
Scaffold N50 (kb) 1,779 496 988
Contig N50 (kb) 116 17 47
Number of scaffolds 374 33,623 446
Number of scaffolds >3 kb 374 4,123 444
Number of contigs 4,620 66,800 8,183
Gap bases in scaffolds 1.7% 5.6% 4.3%
  1. kb, kilobases; Mb, megabases; WGS, whole-genome shotgun.