From: Alternative ion channel splicing in mesial temporal lobe epilepsy and Alzheimer's disease
Gene | GenBank accession number (reference transcript*) | GenBank accession number (variant transcript*) | Alternative splicing event: change of mRNA transcript composition in disease state†| Alternatively spliced region | rtPCR p value |
---|---|---|---|---|---|
mTLE | Â | Â | Â | Â | Â |
   CACNB1 | NM_000723 | NM_199247 | NE: 65% ↑ variant/reference ratio | INTRON 6 | 0.035 |
   CACNB4 | NM_000726 | AY054985 | NE: 4.2x ↑ variant/reference ratio | INTRON 2 | 0.027 |
   CLCN7 | NM_001287 | AK096963 | IR: 65% ↓ variant/total ratio | INTRON 18 | <0.001 |
   FXYD6 | NM_022003 | BP372334 | NE: 22% ↓ variant/reference ratio | INTRON 1 | <0.001 |
   GRIA1 | NM_000827 | A46050 | NE: 62% ↓ variant/reference ratio | INTRON 14 | 0.002 |
   KCNK1 | NM_002245 | AV733795 | PIED: 13% ↓ variant/total ratio | EXON 2 | <0.001 |
   KCNQ2 | NM_004518 | AY358189 | NE: 34% ↓ variant/total ratio | INTRON 7 | <0.001 |
   MCOLN1 | NM_020533 | CA489568 | ASD: 47% ↑ variant/reference ratio | EXON 7 | <0.001 |
AD | Â | Â | Â | Â | Â |
   CACNA1G | NM_018896 | NM_198376 | PIED: 67% ↓ variant/total ratio | EXON 36 | <0.001 |
   GABRA6 | NM_000811 | AK090735 | IR: 30% ↓ variant/reference ratio | INTRON 6 | 0.007 |
   GRIA1 | NM_000827 | A46050 | NE: 2.5x ↑ variant/reference ratio | INTRON 14 | 0.001 |
   KCNAB1 | NM_172160 | NM_172159 | NE: 75% ↓ variant/reference ratio | INTRON 1 | 0.004 |
   KCNN1 | NM_002248 | BM718136 | ASD: 25% ↓ variant/reference ratio | EXON 6 | <0.001 |
   KCNN2 | NM_021614 | BG769522 | ES: 85% ↓ variant/reference ratio | EXON 3 | 0.002 |
   MCOLN1 | NM_020533 | CA489568 | ASD: 19% ↑ variant/reference ratio | EXON 7 | 0.016 |