From: DarkHorse: a method for genome-wide prediction of horizontal gene transfer
 | Self-definition keywords | |||
---|---|---|---|---|
 | K12 83333 316407 562 | Escherichia | Escherichia Shigella | Escherichia Shigella Salmonella |
Enterobacteria | 4,203 | 4,063 | 3,640 | 3,173 |
Other bacteria | 34 | 96 | 346 | 632 |
Phage | 1 | 14 | 55 | 80 |
Eukaryotes | 0 | 6 | 12 | 18 |
Archaea | 0 | 0 | 2 | 3 |
Total matches | 4,243 | 4,179 | 4,055 | 3,906 |
LPImax | 0.993 | 0.984 | 0.950 | 0.918 |
LPImax matches | 4,110 | 3,855 | 3,220 | 2,570 |
LPImax lineage | Bacteria; Proteobacteria; Gamma-proteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia | Bacteria; Proteobacteria; Gamma-proteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella | Bacteria; Proteobacteria; Gamma-proteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella | Bacteria; Proteobacteria; Gamma-proteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia |