Table 2 Breakdown of exon-level accuracy for human. The first two rows show sensitivity and specificity for all exons when a prediction is counted as correct if it overlaps an exon in the evaluation set by at least 1 bp. The remaining rows show sensitivity and specificity for the exact prediction of the four different exon types: initial, internal, and terminal exons in multi-exon genes, and exons that contain a gene's full coding region.
From: CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novogene prediction
| Â | N-SCAN (mouse) | CONTRAST (mouse) | CONTRAST (11 informants) |
|---|---|---|---|
Exon overlap Sn | 91.2 | 95.5 | 96.9 |
Exon overlap Sp | 69.6 | 73.9 | 75.5 |
Initial exon Sn | 60.9 | 72.9 | 76.9 |
Initial exon Sp | 48.8 | 54.1 | 56.9 |
Internal exon Sn | 89.4 | 94.6 | 96.2 |
Internal exon Sp | 68.7 | 76.1 | 77.4 |
Terminal exon Sn | 70.4 | 80.6 | 83.5 |
Terminal exon Sp | 53.8 | 59.8 | 61.9 |
Single exon Sn | 45.9 | 65.2 | 67.5 |
Single exon Sp | 27.7 | 18.8 | 24.8 |