Figure 2
From: Determining promoter location based on DNA structure first-principles calculations
Results of performance comparison for the Encode region between ProStar and other programs (Table S1 in Additional data file 2) using a window size D equal to 1,000 (see Materials and methods). Results obtained compare the predictive power with (a) a subset of 885 Havana protein coding genes, (b) a set of 1,764 non-coding genes, and (c) a set of 1,086 annotated TSSs from a Cage data set that falls inside non-CpG island coding genes (see Materials and methods). Squares indicate methods based on gene prediction (exons, intronic signals, and so on), and other methods are represented with circles.