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Table 2 P values for Thy-Noc dataset

From: A new computational approach to analyze human protein complexes and predict novel protein interactions

 

Peaks of expression (p value)

Pearson (p value)

Protein complex

2 h-0 h

4 h-2 h

6 h-4 h

8 h-6 h

10 h-8 h

12 h-10 h

14 h-12 h

Cell-cycle

AP2

3.67E-01

7.47E-01

7.05E-01

1.00E+00

4.78E-01

6.26E-01

3.73E-01

1.00E+00

ARC

3.49E-02

1.00E+00

1.00E+00

6.95E-03

1.00E+00

7.28E-02

1.00E+00

1.00E+00

Arp2-3

1.00E+00

1.51E-01

3.95E-01

1.00E+00

5.56E-01

1.00E+00

5.00E-01

1.00E+00

ATP_F0

1.00E+00

9.68E-01

9.53E-01

6.30E-01

8.03E-01

1.00E+00

2.21E-03

3.29E-03

ATP_F1

1.00E+00

6.43E-01

1.00E+00

4.92E-01

1.00E+00

1.00E+00

6.77E-01

1.00E+00

APC

2.14E-01

7.26E-01

6.65E-01

2.07E-01

7.28E-01

8.60E-01

6.95E-02

7.16E-01

COX

1.00E+00

7.26E-01

3.54E-01

1.00E+00

3.43E-01

1.00E+00

2.20E-01

1.96E-06

Centrosome

7.58E-01

9.13E-01

9.90E-01

5.96E-01

7.11E-02

7.27E-02

1.46E-01

1.79E-03

Dynactin

9.26E-01

1.00E+00

8.82E-01

7.94E-01

6.80E-01

8.21E-01

3.50E-02

2.35E-01

Exocyst

6.93E-01

3.32E-01

5.87E-01

3.44E-02

6.80E-01

1.81E-01

3.85E-01

2.35E-01

Exosome

8.44E-01

8.20E-01

3.95E-01

1.00E+00

1.00E+00

1.00E+00

1.82E-01

3.62E-01

FA

3.81E-01

6.38E-01

1.49E-01

7.64E-02

9.37E-01

1.27E-01

1.21E-01

1.53E-01

GTC

6.02E-01

8.73E-01

4.97E-01

7.41E-01

2.24E-01

3.89E-01

6.10E-01

4.90E-01

LRS

9.99E-01

8.14E-01

9.96E-01

9.83E-01

9.46E-01

1.00E+00

4.42E-04

2.79E-07

MLRS

9.26E-01

6.68E-01

6.69E-01

4.78E-01

4.17E-02

9.74E-01

1.11E-04

9.41E-01

MSRS

9.40E-01

2.33E-01

2.47E-01

5.82E-01

9.52E-01

9.73E-01

3.11E-04

6.32E-03

Nucleopore

3.14E-01

3.68E-01

1.40E-01

8.82E-01

9.92E-01

3.24E-01

1.13E-03

3.60E-01

Nucleosome

9.91E-01

8.62E-03

9.71E-01

3.53E-01

8.94E-01

9.79E-01

3.28E-01

4.46E-33

ORC

2.75E-01

8.73E-01

8.40E-01

1.01E-01

6.23E-01

3.89E-01

1.00E+00

1.00E+00

PD

6.93E-01

9.10E-01

8.33E-02

4.28E-01

6.80E-01

4.73E-01

7.00E-01

6.11E-01

Proteasome

6.03E-01

9.96E-01

4.02E-01

9.62E-01

6.92E-01

1.00E+00

5.18E-08

1.99E-03

RFC

3.67E-01

1.00E+00

2.84E-01

1.84E-01

1.10E-01

6.26E-01

1.00E+00

1.00E+00

RNA Pol II

6.45E-01

5.92E-01

4.79E-03

1.00E+00

1.00E+00

1.00E+00

3.88E-01

8.68E-01

RNA Pol III

8.44E-01

1.00E+00

3.95E-01

2.66E-01

1.00E+00

7.28E-02

8.48E-01

1.00E+00

SNARE

9.26E-01

1.14E-01

5.87E-01

7.94E-01

2.83E-01

4.73E-01

9.29E-01

6.11E-01

SWI-SNF

5.40E-01

9.04E-01

3.92E-01

9.33E-01

1.00E+00

7.73E-01

3.14E-01

7.92E-01

SRP

9.19E-02

7.47E-01

7.05E-01

1.00E+00

1.00E+00

6.26E-01

9.47E-02

1.00E+00

SCF

6.72E-01

6.43E-01

6.00E-01

1.00E+00

3.86E-01

1.00E+00

3.10E-02

1.00E+00

SRS

9.94E-01

2.00E-01

2.57E-01

9.33E-01

5.95E-01

9.93E-01

7.69E-03

1.67E-11

TAFIID

8.20E-01

3.18E-01

9.81E-01

5.05E-01

3.08E-01

1.00E+00

1.96E-01

4.49E-01

TRAPP

6.02E-01

8.73E-01

1.00E+00

7.41E-01

6.23E-01

1.00E+00

2.82E-01

1.00E+00

VHL

1.00E+00

1.00E+00

2.84E-01

1.00E+00

1.00E+00

1.00E+00

3.73E-01

1.00E+00

  1. P values obtained with the expression peaks method in each time interval of the cell-cycle or with Pearson correlation coefficient throughout the cell-cycle. AP2, adaptor-related protein complex 2; APC, anaphase promoting complex; ARC, axin related complex; ATP_F0, ATP synthase, H+ transporting, mitochondrial F0 complex; ATP_F1, ATP synthase, H+ transporting, mitochondrial F1 complex; COX, cytochrome c oxidase; FA, focal adhesion; GTC, golgi transport complex; MSRS, mitochondrial small ribosomal subunit; ORC, origin recognition complex; PD, pyruvate dehydrogenase; RNA Pol II, RNA polymerase II; SRP, signal recognition particle; TRAPP, trafficking protein particle complex; VHL, von Hippel-Lindau complex.