Skip to main content

Table 3 Neutrality test and genetic diversity for main haplogroups in East Asian domestic pigs and wild boars

From: Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia

Haplogroup

Domestic or wild

No.

Haplotype diversity

Nucleotide diversity

Fs test

Tajima's D

D1a1a

Domestic

291

0.781 ± 0.021

0.00267 ± 0.00016

-18.888*

-1.732*

D1a2

Domestic

98

0.827 ± 0.040

0.00267 ± 0.00021

-27.869*

-1.158

D1a

Domestic

393

0.900 ± 0.008

0.00488 ± 0.00018

-43.161*

-1.824*

D1b

Domestic

88

0.601 ± 0.054

0.00177 ± 0.00013

-5.104*

-1.138

D1c

Domestic

49

0.842 ± 0.022

0.00445 ± 0.00029

-1.538

0.658

D1

Domestic

607

0.943 ± 0.004

0.00556 ± 0.00014

-25.487*

-1.882*

D1

Wild boar

65

0.845 ± 0.051

0.00357 ± 0.00042

-10.64*

-1.07984

D3

Domestic

42a

0.573 ± 0.081

0.00233 ± 0.00053

-2.779*

-1.861*

D4

Domestic

18

0.743 ± 0.052

0.00534 ± 0.00054

0.173

0.802

D

Domestic

689

0.954 ± 0.003

0.00691 ± 0.00014

-25.337*

-1.830*

D

Wild boar

136

0.946 ± 0.036

0.00600 ± 0.00039

-25.582*

-0.30877

  1. All of the values were calculated based on mitochondrial DNA (mtDNA) control region sequences. P < 0.05 in the neutrality test was regarded as statistically significant (indicated by asterisks [*]). Haplogroup D1a1 contained only one mtDNA besides samples belonging to D1a1a and was not listed. Haplogroups containing five or fewer samples were not analyzed. aIncluding feral pigs.