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Table 6 Gene ontologies for up-regulated processes in BCs versus stromal cells

From: GeneChip analysis of human embryonic stem cell differentiation into hemangioblasts: an in silicodissection of mixed phenotypes

Gene category

List hits

EASE score

Cell communication

328

7.47E-07

Cellular process

617

1.25E-06

Cell-cell signaling

79

4.71E-06

Response to external stimulus (lymphocytic)

160

1.38E-05

Ion transport

74

4.07E-04

Response to abiotic stimulus (lymphocytic)

72

4.61E-04

Transport

199

8.97E-04

Cation transport

56

1.08E-03

Defense response (lymphocytic)

95

1.09E-03

Metal ion transport

44

1.30E-03

Response to biotic stimulus (lymphocytic)

101

1.35E-03

Development (developmental)

192

1.55E-03

Intracellular receptor-mediated signaling pathway

8

1.72E-03

Organogenesis (developmental)

108

1.98E-03

Cell adhesion

72

2.17E-03

Morphogenesis (developmental)

118

2.98E-03

Synaptic transmission (neurophysiology)

35

3.04E-03

Signal transduction

238

4.29E-03

Transmission of nerve impulse (neurophysiology)

35

5.07E-03

Regulation of blood pressure

9

5.42E-03

Monovalent inorganic cation transport

36

6.29E-03

Steroid hormone receptor signaling pathway

7

6.65E-03

Homeostasis

17

6.77E-03

Cell surface receptor linked signal transduction

113

8.56E-03

Perception of abiotic stimulus (lymphocytic)

39

1.09E-02

Hemostasis

17

1.10E-02

Second-messenger-mediated signaling

20

1.18E-02

Potassium ion transport

22

1.19E-02

Cyclic-nucleotide-mediated signaling

18

1.24E-02

Blood coagulation (coagulation)

16

1.39E-02

Response to chemical substance (lymphocytic)

31

1.45E-02

Heme biosynthesis (erythrocytic)

5

1.48E-02

Gas transport (erythrocytic)

5

2.00E-02

Oxygen transport (erythrocytic)

5

2.00E-02

Neurogenesis (neuronal)

51

2.02E-02

Cell homeostasis

15

2.31E-02

Perception of external stimulus (lymphocytic)

41

2.41E-02

Estrogen receptor signaling pathway

4

2.48E-02

Heme metabolism (erythrocytic)

5

2.61E-02

Homophilic cell adhesion

16

2.74E-02

Pigment biosynthesis (erythrocytic)

6

2.84E-02

Circulation (erythrocytic)

17

2.94E-02

Olfaction

9

3.02E-02

Response to pest/pathogen/parasite (lymphocytic)

52

3.19E-02

Acute-phase response (coagulation)

6

3.43E-02

Skeletal development

19

3.72E-02

Sensory perception

37

3.86E-02

Disaccharide metabolism

3

3.86E-02

Enzyme linked receptor protein signaling pathway

24

3.96E-02

Heart development (heart development)

6

4.09E-02

  1. This comparison identified the most number of genes and had the most diverse gene ontologies.