The global landscape of sequence diversity

Table 2 Sequence and gene family discovery rates for various complete and partial genome datasets

		Sequence rate (%)^†		Family rate (%)^†
Dataset*	No. of complete/partial genomes	OSDR	CSDR	OGDR	CGDR
CG Archaea	19	37.8	-	38.7	-
CG Bacteria	161	19.5	11.8 (± 1.5)	22.4	15.4 (± 1.8)
CG Bacteria strains filtered	127	28.4	15.9 (± 1.5)	26.6	20.6 (± 1.7)
CG Bacteria	127		13.4 (± 1.7)		17.0 (± 2.0)
CG Bacteria species filtered	86	23.2	20.9 (± 1.6)	31.5	26.1 (± 1.6)
CG Bacteria	86		16.3 (± 1.8)		19.9 (± 2.1)
CG Eukarya	19	39.0	-	30.8	-
PG All	193	53.7	40.3 (± 2.9)	47.7	42.8 (± 2.8)
PG Arthropods	16	74.7	-	66.4	-
PG Deuterostomes	21	71.7	-	60.8	-
PG Fungi	27	70.2	-	60.2	-
PG Nematodes	31	62.8	-	47.0	-
PG Protists	17	88.1	-	71.5	-
PG Viridiplantae	76	48.3	-	37.8	-
CG Bacteria sequences > 100 residues	161	-	8.6 (± 1.4)	-	-
PG Sequences > 300 bp	193	-	35.6 (± 2.8)	-	-

*CG, complete genome datasets; PG, partial genome datasets; 'strains filtered' indicate that only a single species representative was included in the analysis; 'species filtered' indicate that only a single genus representative was included in the analysis. ^†OSDR, overall sequence discovery rate (the total number of distinct sequences/total number of sequences); CSDR, current sequence discovery rate (obtained from Figure 1d, e); OGDR, overall gene family discovery rate (total number of families/total number of sequences); CGDR, current gene family discovery rate (obtained from Figure 1d, e).

ISSN: 1474-760X