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Table 2 Diagnostic for GENCODE genes missed by Exogean

From: Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA

Class of diagnostic

Number of cases

Description of the cause

1

33

Proteins matching multiple neighboring genes in clusters

2

8

GENCODE CDS size below 300 nucleotides

3

3

GENCODE CDS interrupted by the boundaries of the Encode region

4

2

Insufficient evidence to predict the gene

5

3

Protein evidence eliminated by Exogean

6

1

mRNA evidence eliminated by Exogean

7

2

Intron donor/acceptor sites not accepted by Exogean

8

1

mRNA evidence was misaligned with genomic DNA