Table 3 4-mer usage of exonic sequence at donor splice site of lost and corresponding retained introns
From: Intron gain and loss in segmentally duplicated genes in rice
Intron lost | Intron retained | |||||
|---|---|---|---|---|---|---|
Locus name* | 4-mer†| Rank‡ | Locus name§ | Phase | 4-mer | Rank |
LOC_Os05g48520.1 | CAAG | 256 | LOC_Os01g48540.1 | 0 | CAAG | 256 |
LOC_Os06g44300.1 | CGAG | 245 | LOC_Os02g08230.1 | 0 | CGAG | 245 |
LOC_Os06g11920.1 | CAAG | 256 | LOC_Os02g51600.1 | 0 | CAAG | 256 |
LOC_Os06g10850.1 | GAGG | 219 | LOC_Os02g52830.1 | 0 | CCAT | 211 |
LOC_Os07g02440.1 | CGAC | 130 | LOC_Os03g55420.1 | 0 | CGAG | 245 |
LOC_Os07g12340.1 | CAGG | 234 | LOC_Os03g60080.1 | 0 | CAGG | 234 |
LOC_Os01g13130.1 | CGCC | 154 | LOC_Os05g14240.1 | 0 | CATG | 244 |
LOC_Os11g01820.1 | GCTC | 103 | LOC_Os05g39600.1 | 0 | CATG | 244 |
LOC_Os12g02840.1 | CCTC | 172 | LOC_Os05g40650.1 | 0 | CCTC | 172 |
LOC_Os02g14430.1 | CCAG | 251 | LOC_Os06g35480.1 | 0 | CAAC | 193 |
LOC_Os09g39720.1 | GGAG | 246 | LOC_Os08g44590.1 | 0 | GGAG | 246 |
LOC_Os02g54640.1 | GTTC | 28 | LOC_Os09g26160.1 | 0 | TTTT | 133 |
LOC_Os08g39370.1 | CAAC | 193 | LOC_Os09g31130.1 | 0 | CAAC | 193 |
LOC_Os08g41880.1 | CGAG | 245 | LOC_Os09g32840.1 | 0 | TGAG | 253 |
LOC_Os03g01820.1 | GAGG | 219 | LOC_Os10g39810.1 | 0 | CAAG | 256 |
LOC_Os05g38420.1 | TTCG | 225 | LOC_Os01g62490.1 | 1 | TTCG | 225 |
LOC_Os06g12960.1 | GACG | 228 | LOC_Os02g50810.1 | 1 | CACG | 222 |
LOC_Os09g26160.1 | CATC | 54 | LOC_Os02g54640.1 | 1 | CACA | 171 |
LOC_Os06g51050.1 | ACCG | 223 | LOC_Os03g04060.1 | 1 | ACAG | 250 |
LOC_Os02g46780.1 | GCCG | 227 | LOC_Os04g50770.1 | 1 | GCAG | 251 |
LOC_Os01g50760.1 | GGAG | 247 | LOC_Os05g46580.1 | 1 | GGAG | 247 |
LOC_Os11g09020.1 | GTCG | 216 | LOC_Os12g08090.1 | 1 | ATCT | 194 |
LOC_Os05g04690.1 | CGTG | 88 | LOC_Os01g18400.1 | 2 | CATG | 237 |
LOC_Os05g48700.1 | TGAG | 246 | LOC_Os01g55240.1 | 2 | TCCG | 222 |
LOC_Os05g39720.1 | GGTG | 115 | LOC_Os01g61080.1 | 2 | GATG | 217 |
LOC_Os07g49280.1 | CAAG | 254 | LOC_Os03g18140.1 | 2 | CCCG | 142 |
LOC_Os07g49150.1 | AGAG | 251 | LOC_Os03g18690.1 | 2 | AGAG | 251 |
LOC_Os07g49000.1 | GGAG | 245 | LOC_Os03g19200.1 | 2 | GGAG | 245 |
LOC_Os09g26360.1 | GAAG | 249 | LOC_Os08g34910.1 | 2 | GAAG | 249 |
LOC_Os08g41730.1 | GCGG | 208 | LOC_Os09g32800.1 | 2 | GCGG | 208 |
LOC_Os12g08090.1 | TGCG | 115 | LOC_Os11g09020.1 | 2 | TGCT | 163 |
LOC_Os01g09540.1 | TCGG | 225 | LOC_Os05g10210.1 | 2 | ATGG | 238 |
LOC_Os05g10210.1 | TCCA | 175 | LOC_Os01g09540.1 | 2 | TAAG | 248 |
LOC_Os03g21820.1 | GCCG | 195 | LOC_Os05g39990.1 | 2 | GCAG | 252 |