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Table 1 Summary of the results of the GRAM, SAMBA and ReMoDiscovery module discovery methods

From: Inferring transcriptional modules from ChIP-chip, motif and microarray data

Method No. Genes Regulatory program
   Mean Min Max Mean functional enrichment Mean Min Max
ReMoDiscovery (seed modules) 20 2.05 2 3 0.05 6.15 3 12
ReMoDiscovery (extended modules) 18 67.72 6 200 2.00E-03 3.50 2 6
GRAM 274 6.80 5 33 0,02 2.35 1 8
SAMBA 205 57.53 5 265 1.10E-02 4.16 0 31
  1. The number of modules (No.) and the mean (Mean), minimum (Min) and maximum (Max) number of genes and regulators in the identified modules are displayed, as well as the average functional enrichment of the modules (Mean functional enrichment).