Inferring transcriptional modules from ChIP-chip, motif and microarray data

Table 1 Summary of the results of the GRAM, SAMBA and ReMoDiscovery module discovery methods

Method	No.	Genes				Regulatory program
		Mean	Min	Max	Mean functional enrichment	Mean	Min	Max
ReMoDiscovery (seed modules)	20	2.05	2	3	0.05	6.15	3	12
ReMoDiscovery (extended modules)	18	67.72	6	200	2.00E-03	3.50	2	6
GRAM	274	6.80	5	33	0,02	2.35	1	8
SAMBA	205	57.53	5	265	1.10E-02	4.16	0	31

The number of modules (No.) and the mean (Mean), minimum (Min) and maximum (Max) number of genes and regulators in the identified modules are displayed, as well as the average functional enrichment of the modules (Mean functional enrichment).

ISSN: 1474-760X