Skip to main content

Table 5 Features of proteins from genes with novel coding regions

From: Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

HUGO gene ID

Ensembl gene ID

AAs in domain

Domain ID

Domain name

Gene name

PLG

ENSG00000122194

23

P00747

Kringle

Plasminogen precursor

BF

ENSG00000166285

28

P00751

Peptidase S1, trypsin

Complement factor B precursor

APOB

ENSG00000084674

21

Q13787

Vitellogenin

Apolipoprotein B-100 precursor

C4BPA

ENSG00000123838

29

P04003

Sushi

C4b-binding protein alpha chain precursor

HPX

ENSG00000110169

15

P02790

Hemopexin-like

Hemopexin precursor

GC

ENSG00000145321

17

P02774

Albumin

Vitamin D-binding protein precursor

PLEKHA4

ENSG00000105559

7

PS50003

PH_DOMAIN

Pleckstrin homology domain-containing protein family A member-4

IGLC1, IGLC2, IGLC3, IGLV1-40, IGLV3-25, IGLV4-3

ENSG00000100208

12

PS50835

IG-LIKE

Ig lambda chain C region

IGHA1, IGHG3, IGHM

ENSG00000130076

11

PS50835

IG-LIKE

Ig alpha-1 chain C region

-

ENSG00000142082

51

PS50305

SIRTUIN

NAD-dependent deacetylase sirtuin-3 mitochondrial precursor

TF

ENSG00000091513

11

PS00207

TRANSFERRIN

Serotransferrin precursor

  1. A list of the protein domains that the novel OE peptides overlapped. HUGO gene ID, Hugo gene identifiers; Ensembl gene ID, Ensembl gene identifier; AAs in domain, number of amino acids from the peptide that are part of the domain; Domain ID, the Uniprot or Prosite identifier for the domain (Prosite identifiers begin with the letters 'S'); Domain name, the common name assigned to the domain in either Uniprot or Prosite.