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Table 2 A representative set of peptide containing genes

From: Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

HUGO gene ID

Ensembl gene ID

PT

PM

IE

OE

NE

Gene description

-

ENSG00000198209

28

26

0

2

0

Complement component 4B preproprotein

A1BG

ENSG00000121410

19

19

0

0

0

Alpha-1B-glycoprotein precursor (Alpha-1-B glycoprotein)

A2M

ENSG00000175899

47

46

0

0

1

Alpha-2-macroglobulin precursor (Alpha-2-M)

AFM

ENSG00000079557

12

11

0

0

1

Afamin precursor (Alpha-albumin; Alpha-Alb)

AGT

ENSG00000135744

21

21

0

0

0

Angiotensinogen precursor (contains angiotensin I (Ang I); angiotensin II (Ang II); angiotensin III (Ang III) (Des-Asp[1]-angiotensin II)).

AHSG

ENSG00000145192

24

24

0

0

0

Alpha-2-HS-glycoprotein precursor (Fetuin-A; Alpha-2-Z-globulin; Ba-alpha-2-glycoprotein)

ALB

ENSG00000163631

111

108

0

3

0

Serum albumin precursor

ANKRD24

ENSG00000089847

7

0

5

2

0

F20887_1, partial CDS (fragment)

APC2

ENSG00000115266

9

0

5

0

4

Adenomatosis polyposis coli 2

APCS

ENSG00000132703

11

11

0

0

0

Serum amyloid P-component precursor (SAP; 9.5S alpha-1-glycoprotein; contains serum amyloid P-component(1-203))

APOA1

ENSG00000118137

53

52

0

1

0

Apolipoprotein A-I precursor (Apo-AI; ApoA-I; contains apolipoprotein A-I(1-242))

APOA2

ENSG00000158874

17

15

0

2

0

Apolipoprotein A-II precursor (Apo-AII; ApoA-II; contains apolipoprotein A-II(1-76))

APOB

ENSG00000084674

112

110

0

2

0

Apolipoprotein B-100 precursor (Apo B-100; contains apolipoprotein B-48 (Apo B-48))

APOC3

ENSG00000110245

4

4

0

0

0

Apolipoprotein C-III precursor (Apo-CIII; ApoC-III)

APOE

ENSG00000130203

13

13

0

0

0

Apolipoprotein E precursor (Apo-E)

APOF

ENSG00000175336

4

4

0

0

0

Apolipoprotein F precursor (Apo-F)

APOH

ENSG00000091583

15

15

0

0

0

Beta-2-glycoprotein I precursor (apolipoprotein H; Apo-H; B2GPI; Beta(2)GPI; activated protein C-binding protein; APC inhibitor; anticardiolipin cofactor)

APOL1

ENSG00000100342

5

5

0

0

0

Apolipoprotein-L1 precursor (apolipoprotein L-I; apolipoprotein L; ApoL-I; Apo-L; ApoL)

AZGP1

ENSG00000160862

9

9

0

0

0

Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein; Zn-alpha-2-GP)

AZI1

ENSG00000141577

3

0

0

3

0

5-azacytidine induced 1 isoform a

BF

ENSG00000166285

9

7

0

2

0

Complement factor B precursor (EC 3.4.21.47; C3/C5 convertase; properdin factor B; glycine-rich beta glycoprotein; GBG; PBF2)

  1. A breakdown of the distribution of diagnostic peptides among the 128 parent genes they occur in. HUGO gene ID, HUGO gene identifier; Ensembl gene ID, the Ensembl identifier for the gene containing the diagnostic peptides; PT, the total number of diagnostic peptides found within the coding boundaries of this gene; PM, number of perfect-matching peptides to a protein product of this gene; IE, number of intra-exonic peptides associated with this gene; OE, number of exon overlapping peptides associated with this gene; NE, number of non-exonic peptides associated with this gene; Gene description, the name given to the gene according to the Ensembl Genome Browser database. A complete list is available in Additional data file 1.