From: The genome of Rhizobium leguminosarum has recognizable core and accessory components
Gene and name (if known)a | GC3s, quartopb | Closest homologsc | ||
---|---|---|---|---|
 |  | Species | Gene | BLAST e value |
RL0422 (RpoN, used for N assimilation) | 0.791 Y | S. meliloti | SMc01139 | 0.0 |
 |  | A. tumefaciens | AGR_C_581 | 0.0 |
 |  | M. loti | mll3196 | 2E-161 |
 |  | Brucella suis | BR0158 | 3E-156 |
RL0788 | 0.732 N | Pseudomonas fluorescens | Pflu02001224 | 9E-56 |
 |  | Erwinia carotovora | ECA2017 | E-43 |
 |  | Burkholderia ambifaria | BambDRAFT_3017 | 9E-30 |
 |  | S. meliloti | SMa01432 | 2E-27 |
 |  | A.tumefaciens | AGR_C_2739 | 2E-16 |
 |  | M.loti | mlr77732 | E-16 |
RL1138 | 0.714 N | Ralstonia eutropha | Reut_B3794 | E-47 |
 |  | Bradyrhizobium japonicum | bll6484 | 2E-44 |
 |  | Silicibacter pomeroyi | SPO31254 | E-29 |
 |  | M. loti | mlr7773 | 7E-29 |
 |  | A. tumefaciens | AGR_C_2739 | 2E-28 |
 |  | S. meliloti | SMc01419 | 9E-23 |
RL3020 | 0.749 Y | A. tumefaciens | AGR_C_4121 | 6E-56 |
 |  | B. suis | BRA0021 | 2E-32 |
 |  | Burkholderia fungorum | Bcep02004893 | 7E-32 |
 |  | Caulobacter crescentus | CC3253 | 2E-30 |
 |  | M. loti | mll3493 | 4E-25 |
 |  | S. meliloti | SMb20531 | 2E-18 |
RL3235 | 0.777 N | S. meliloti | SMc01419 | E-48 |
 |  | A. tumefaciens | AGR_C_3679p | 9E-44 |
 |  | Sphingopyxis alaskensis | SalaDRAFT_1954 | 5E-23 |
 |  | B. japonicum | bll2628 | 6E-23 |
 |  | M. loti | mlr04075 | E-18 |
RL3402 (RpoD, 'housekeeping' σ) | 0.823 Y | A. tumefaciens | AGR_C_3929p | 0.0 |
 |  | S. meliloti | SMc01563 | 0.0 |
 |  | B. suis | BR1479 | 0.0 |
 |  | M. loti | mll2466 | 0.0 |
RL3509 | 0.758 N | S. meliloti | SMc02713 | 2E-38 |
 |  | S. alaskensis | SalaDRAFT_1954 | 4E-18 |
 |  | Burkholderia cepacia | Bcepa03005434 | 5E-18 |
 |  | Novosphingobium aromaticivorans | DSM 12444 | 2E-17 |
 |  | A. tumefaciens | AGR_C_3679 | E-14 |
 |  | M. loti | mlr7773 | 5E-12 |
RL3703 (RpoZ) | 0.790 Y | S. meliloti | SMc01506 | 5E-84 |
 |  | B. suis | BR1658 | 3E-80 |
 |  | Bartonella henselae | BH13830 | 5E-73 |
 |  | A. tumefaciens | AGR_L_1386p | 5E-68 |
 |  | M. loti | mll3697 | 7E-68 |
RL3766 (RpoH, heat shock σ) | 0.794 Y | A. tumefaciens | AGR_C_4439p | 2E-155 |
 |  | S. meliloti | SMc00646 | 3E-148 |
 |  | M. loti | mlr3741 | 5E-138 |
 |  | B. suis | BR1650 | E-133 |
RL4524 | 0.780 N | M. loti | mlr8088 | 5E-38 |
 |  | Rhodospirillum rubrum | Rrub02003750 | 3E-37 |
 |  | Rhodobacter sphaeroides | 'rpoE' | 3E-34 |
 |  | Magnetospirillum magnetotacticum | Magn03011107 | E-33 |
 |  | S. meliloti | None listed in top 50 matches | |
 |  | A. tumefaciens | None listed in top 50 matches | |
RL4614 (RpoH2, heat shock σ) | 0.771 N | S. meliloti | SMc03873 | 5E-118 |
 |  | M. loti | mlr3862 | 2E-98 |
 |  | B. suis | BR1763 | 5E-97 |
 |  | B. henselae | BH15210 | 3E-95 |
 |  | A. tumefaciens | AGR_C_4439pd | 7E-58 |
pRL10385 | 0.720 N | M. loti | mll1224 | 2E-52 |
 |  | Microbulbifer degradans | Mdeg02003584 | E-28 |
 |  | R. sphaeroides | Rsph03003515 | E-27 |
 |  | Solibacter usitatus | AcidDRAFT_4778 | 6E-22 |
 |  | S. meliloti | None listed in top 50 matches | |
 |  | A. tumefaciens | None listed in top 50 matches | |
pRL11007 (EcfR) | 0.778 N | M. loti | mlr0407 | 4E-57 |
 |  | R. sphaeroides | Rsph03002607 | E-45 |
 |  | M. magnetotacticum | Magn03006880 | 8E-39 |
 |  | Bordetella parapertussis | BPP1584 | 4E-37 |
 |  | A. tumefaciens | AGR_L_1386p | 3E-24 |
 |  | S. meliloti | SMa0143 | 2E-22 |
pRL110418 | 0.794 N | B. japonicum | blr7812 | 2E-83 |
 |  | Streptomyces avermitilis | SAV7424 | 7E-74 |
 |  | Nocardia farcina | nfa4970 | 3E-73 |
 |  | Frankia sp. | Francci3DRAFT_3517 | 7E-66 |
 |  | M. loti | mll6869 | 8E-33 |
 |  | S. meliloti | None listed in top 50 matches | |
 |  | A. tumefaciens | None listed in top 50 matches | |
pRL120319 (RpoI, iron uptake sigma) | 0.640 N | Azotobacter vinelandii | AvinDRAFT_4065 | 4E-20 |
 |  | Pseudomonas aeruginosa | 'pvdS'e | 3E-18 |
 |  | S. meliloti | SMc04203 | 8E-09 |
 |  | A. tumefaciens | AGR_pAT_442 | 2E-08 |
pRL120580 | 0.587 N | Rhodopseudomonas palustris | RPA0550 | 4E-40 |
 |  | R. rubrum | Rrub02003750 | 8E-38 |
 |  | M. magnetotacticum | Magn03011107 | 5E-37 |
 |  | Pseudomonas syringae | PSPTO1043 | 3E-28 |
 |  | M. loti | mlr8088 | 4E-26 |
 |  | A. tumefaciens | AGR_C_3605 | 6E-14 |
 |  | S. meliloti | None listed in top 50 matches |