Skip to main content

Advertisement

Table 2 The number of spectra acquired and peptides identified per experiment

From: Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas

Experiment numSpec(P > 0.0) numSpec(P > 0.9) numDistinctPeptides(cumulative, P > 0.9)
gricat 24,833 2,585 734
cdc15_cdc23_newICAT 172,938 22,269 2,889
cdc15_cdc23_oldICAT 156,353 8,281 3,184
cdc15_cdc23_ICAT 21,392 3,337 3,293
cdc23_amf_newICAT 127,673 25,861 4,096
contFFE2Murea 105,686 5,473 4,430
FFEY1 64,880 2,966 5,994
FFEY1Scx 7,045 796 6,396
FFEY2 60,140 7,159 8,877
PeteryeastIcatstdFFE 136,563 4,680 9,375
TSAAT000c 217,919 43,628 11,423
TSAAT030c 249,774 42,519 12,042
TSAAT060c 214,851 28,089 12,424
TSAAT090c 198,057 31,428 13,247
TSAAT120c 179,408 26,182 13,588
TSAAxT000old 101,166 6,311 13,728
T00 94,208 9,206 13,840
T30 83,758 8,758 13,935
T50 106,572 4,606 14,026
opd00034_YEAST 24,049 4,554 14,557
opd00035_YEAST 23,715 3,931 14,862
peroximalPrep0702 24,209 3,197 15,236
Comp12vs12sizefrac 28,926 11,703 17,553
pxproteome 23,720 1,552 17,724
Comp12vs12standSCX 31,652 12,103 18,966
YeastICAT 55,922 6,760 19,577
PvM1 3,796 323 19,623
peroximal_clICAT 92,721 3,693 19,778
Ac30 255,937 37,873 20,025
yeast 140,567 29,411 24,548
gel_msms 343,654 43,022 32,450
mudpit 36,599 10,811 32,859
ipg_ief 136,209 27,792 33,383
rp_int_selected 53,358 14,669 33,684
rp_mass_selected 71,151 4,881 33,857
sdspage 92,802 19,208 34,734
YM_N14N15_DAYGly 38,951 1,658 34,806
YM_N14N15_DAYSer 39,315 1,862 34,843
YM_N14N15_SCYGly 37,124 1,364 34,861
YM_N14N15_SCYSer 37,658 2,238 34,902
APEX_04-22 38,334 1,732 34,926
APEX_04-23 38,175 1,775 34,949
APEX_04-24 36,407 1,359 34,963
APEX_04-28 40,612 2,248 34,995
YeastSCXReps 118,083 60,568 35,446
FFE_nonICAT 21,054 6,870 36,133
  1. Column 1 is the experiment name, column 2 is the number of spectra associated with PeptideProphet probabilities >0, column 3 is the number of spectra associated with PeptideProphet probabilities >0.9, and column 4 is the cumulative number of distinct peptides with PeptideProphet probabilities >0.9.