Table 6 The 65 genes with variable expression patterns among the five accessions
From: Contribution of transcriptional regulation to natural variations in Arabidopsis
Functional category | ATH1 hits | GenBank ID | Description |
|---|---|---|---|
30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM | |||
14807_at | At2g17170 | gb|AAD25145.1| | Protein kinase family contains protein kinase domain, Pfam:PF00069 |
12528_at | At2g22200 | gb|AAD23620.1| | AP2 domain transcription factor |
16848_at | At2g20470 | gb|AAD25647.1| | Protein kinase, putative contains protein kinase domain, Pfam:PF00069 |
15069_s_at | At2g28060 | gb|AAC98460.1| | AKINbeta3 protein, protein kinase-related |
12358_at | At1g54610 | gb|AAC64876.1| | Similar to CRK1 protein GI:7671528 from [Beta vulgaris] |
18510_at | At1g60630 | gb|AAB71975.1| | Leucine rich repeat protein family, similar to receptor kinase GI:498278 from [Petunia integrifolia] |
16881_at | At1g69990 | gb|AAB61113.1| | Leucine-rich repeat transmembrane protein kinase, putative |
18478_at | At1g78530 | gb|AAD30583.1| | Protein kinase family contains protein kinase domain, Pfam:PF00069 |
17223_at | At1g78980 | gb|AAC17069.1| | Leucine-rich repeat transmembrane protein kinase, putative |
16801_s_at | At4g29990 | emb|CAB43834.1| | Identical to light repressible receptor protein kinase |
16849_at | At4g36070 | emb|CAA18501.1| | Calcium-dependent serine/threonine protein kinase isoform AK1 |
11 TRANSCRIPTION | |||
18443_at | At2g03060 | gb|AAC32924.1| | MADS-box protein |
14963_at | At1g09920 | gb|AAB60744.1| | Expressed protein, TRAF-type zinc finger-related |
19242_at | At2g13570 | gb|AAD22680.1| | CCAAT-box binding trancription factor -related |
12528_at | At2g22200 | gb|AAD23620.1| | AP2 domain transcription factor |
12220_at | At2g20100 | gb|AAD24387.1| | Expressed protein, bHLH - like protein (bHLH133) |
14313_at | At2g26130 | gb|AAC31224.1| | Hypothetical protein, zinc finger (C3HC4-type RING finger) family protein |
16175_g_at | At2g29610 | gb|AAC35234.1| | F-box protein family contains Pfam profile PF00646: F-box domain |
14370_at | At1g54550 | gb|AAD25633.1| | F-box protein family contains Pfam:PF00646 F-box domain |
14760_at | At3g46800 | emb|CAB51185.1| | CHP-rich zinc finger protein, putative |
16209_s_at | At4g10240 | emb|CAB39777.1| | CONSTANS B-box zinc finger family protein |
14216_at | At5g01290 | gb|AAD56326.1| | mRNA capping enzyme - like protein mRNA capping enzyme (HCE), Homo sapiens |
18169_at | At4g31615 | emb|CAA19761.1| | Transcriptional factor B3 family low similarity to reproductive meristem gene 1 from [Brassica oleracea var. botrytis] |
12282_at | At5g44800 | gb|AAC79140.1| | Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE) |
20 CELLULAR TRANSPORT, TRANSPORT FACILITATION AND TRANSPORT ROUTES | |||
20248_at | At2g14670 | gb|AAC69375.1| | Sucrose transporter (sucrose-proton symporter), putative |
18549_s_at | At2g22950 | gb|AAF18608.1| | Potential calcium-transporting ATPase 7, plasma membrane-type |
19487_at | At2g25580 | gb|AAD31361.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
17363_s_at | At2g32830 | dbj|BAA24280.1| | Identical to inorganic phosphate transporter (PHT5) |
17242_at | At2g35540 | gb|AAC36167.1| | DnaJ domain-containing protein, contains Pfam profile PF00226: DnaJ domain |
12389_at | At1g78720 | gb|AAC83037.1| | Protein transport protein sec61 alpha subunit -related |
18196_at | At4g14820 | emb|CAB10261.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
19255_at | At4g20770 | emb|CAB45843.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
16748_s_at | At4g21300 | emb|CAA17548.1| | Pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats |
15355_s_at | At4g21560 | emb|CAB36800.1| | Expressed protein hypothetical protein YPL065w yeast, PIR2:S60925 |
70 SUBCELLULAR LOCALIZATION | |||
18443_at | At2g03060 | gb|AAC32924.1| | MADS-box protein |
12528_at | At2g22200 | gb|AAD23620.1| | AP2 domain transcription factor |
12358_at | At1g54610 | gb|AAC64876.1| | Similar to CRK1 protein GI:7671528 from [Beta vulgaris] |
12389_at | At1g78720 | gb|AAC83037.1| | Protein transport protein Sec61 alpha subunit -related |
15486_at | At4g01880 | gb|AAD22650.1| | Expressed protein |
12282_at | At5g44800 | gb|AAC79140.1| | Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE) |
14 PROTEIN FATE (folding, modification, destination) | |||
19487_at | At2g25580 | gb|AAD31361.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
12655_at | At2g31780 | gb|AAD32294.1| | Ariadne protein from Drosophila -related |
17242_at | At2g35540 | gb|AAC36167.1| | DnaJ domain-containing protein, contains Pfam profile PF00226: DnaJ domain |
19797_at | At1g64030 | gb|AAC27146.1| | Serpin family similar to phloem serpin-1 [Cucurbita maxima] GI:9937311 |
12389_at | At1g78720 | gb|AAC83037.1| | Protein transport protein sec61 alpha subunit -related |
18408_s_at | At4g03360 | gb|AAD14465.1| | Ubiquitin family contains INTERPRO:IPR000626 ubiquitin domain |
18196_at | At4g14820 | emb|CAB10261.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
19255_at | At4g20770 | emb|CAB45843.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
16748_s_at | At4g21300 | emb|CAA17548.1| | Pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats |
32 CELL RESCUE, DEFENSE AND VIRULENCE | |||
16175_g_at | At2g29610 | gb|AAC35234.1| | F-box protein family contains Pfam profile PF00646: F-box domain |
17242_at | At2g35540 | gb|AAC36167.1| | DnaJ domain-containing protein, contains Pfam profile PF00226: DnaJ domain |
14370_at | At1g54550 | gb|AAD25633.1| | F-box protein family contains Pfam:PF00646 F-box domain |
12358_at | At1g54610 | gb|AAC64876.1| | Similar to CRK1 protein GI:7671528 from [Beta vulgaris] |
16803_at | At1g61230 | gb|AAB71472.1| | Jacalin lectin family similar to myrosinase-binding protein homolog |
17294_at | At4g19500 | emb|CAA16927.2| | Disease resistance protein (TIR-NBS-LRR class), putative |
17306_at | At5g35940 | gb|AAB63636.1| | Jacalin lectin family similar to myrosinase-binding protein homolog |
42 BIOGENESIS OF CELLULAR COMPONENTS | |||
19487_at | At2g25580 | gb|AAD31361.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
20031_at | At4g14310 | emb|CAB10210.1| | Expressed protein, peroxisomal membrane protein-related |
18196_at | At4g14820 | emb|CAB10261.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
19255_at | At4g20770 | emb|CAB45843.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
16748_s_at | At4g21300 | emb|CAA17548.1| | Pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats |
17733_at | At4g28090 | emb|CAB36778.1| | Pectinesterase (pectin methylesterase), putative, similar to pollen-specific BP10 protein [SP|Q00624] [Brassica napus] |
17586_at | At5g16850 | gb|AAD54777.1| | Telomerase reverse transcriptase |
12282_at | At5g44800 | gb|AAC79140.1| | Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE) |
01 METABOLISM | |||
17817_at | At2g23096 | gb|AAC17826.1| | Oxidoreductase -related temporary gene name assignment |
18423_at | At1g51260 | gb|AAD30638.1| | Acyl-CoA:1-acylglycerol-3-phosphate acyltransferase, putative |
12358_at | At1g54610 | gb|AAC64876.1| | Similar to CRK1 protein GI:7671528 from [Beta vulgaris] |
13726_at | At1g74800 | gb|AAD55296.1| | Galactosyltransferase family contains Pfam profile: PF01762 galactosyltransferase |
19038_at | At3g52160 | emb|CAB41336.1| | Beta-ketoacyl-CoA synthase family protein |
17646_at | At4g20080 | emb|CAA16616.1| | C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain |
14274_at | At5g20980 | emb|CAB38313.1| | 5-Methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase - like protein |
16 PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic) | |||
12655_at | At2g31780 | gb|AAD32294.1| | Ariadne protein from Drosophila-related |
18510_at | At1g60630 | gb|AAB71975.1| | Leucine rich repeat protein family, similar to receptor kinase GI:498278 from [Petunia integrifolia] |
16881_at | At1g69990 | gb|AAB61113.1| | Leucine-rich repeat transmembrane protein kinase, putative |
17223_at | At1g78980 | gb|AAC17069.1| | Leucine-rich repeat transmembrane protein kinase, putative |
16801_s_at | At4g29990 | emb|CAB43834.1| | Identical to light repressible receptor protein kinase |
12282_at | At5g44800 | gb|AAC79140.1| | Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE) |
10 CELL CYCLE AND DNA PROCESSING | |||
12655_at | At2g31780 | gb|AAD32294.1| | Ariadne protein from DROSOPHILA -related |
17242_at | At2g35540 | gb|AAC36167.1| | DnaJ domain-containing protein, contains Pfam profile PF00226: DnaJ domain |
12358_at | At1g54610 | gb|AAC64876.1| | Similar to CRK1 protein GI:7671528 from [Beta vulgaris] |
12282_at | At5g44800 | gb|AAC79140.1| | Chromodomain-helicase-DNA-binding (CHD) protein family similar to chromatin remodeling factor CHD3 (PICKLE) |
02 ENERGY | |||
19487_at | At2g25580 | gb|AAD31361.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
18196_at | At4g14820 | emb|CAB10261.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
19255_at | At4g20770 | emb|CAB45843.1| | Pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat |
16748_s_at | At4g21300 | emb|CAA17548.1| | Pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats |
38 TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS | |||
16879_at | At2g05550 | gb|AAD24652.1| | non-LTR retroelement reverse transcriptase -related |
15400_at | At4g08110 | gb|AAD27901.1| | Expressed protein, CACTA-like transposase family (Ptta/En/Spm) |
17201_at | At4g13120 | emb|CAB41922.1| | Hypothetical protein |
40 CELL FATE | |||
12389_at | At1g78720 | gb|AAC83037.1| | Protein transport protein sec61 alpha subunit -related |
13058_s_at | At4g17580 | emb|CAB10538.2| | Similar to SP|Q9LD45 Bax inhibitor-1 (BI-1) (AtBI-1) |
41 DEVELOPMENT (systemic) | |||
18443_at | At2g03060 | gb|AAC32924.1| | MADS-box protein |
12389_at | At1g78720 | gb|AAC83037.1| | Protein transport protein sec61 alpha subunit -related |
34 INTERACTION WITH THE CELLULAR ENVIRONMENT | |||
12358_at | At1g54610 | gb|AAC64876.1| | Similar to CRK1 protein GI:7671528 from [Beta vulgaris] |
36 INTERACTION WITH THE ENVIRONMENT (Systemic) | |||
12389_at | At1g78720 | gb|AAC83037.1| | Protein transport protein sec61 alpha subunit -related |
12 PROTEIN SYNTHESIS | |||
16667_at | At3g48960 | emb|CAB51060.1| | 60S ribosomal protein L13 (RPL13C) |