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Table 4 Genes whose expression is different in leaves of the five accessions by one-way ANOVA analysis

From: Contribution of transcriptional regulation to natural variations in Arabidopsis

Functional category ATH1 hits rawp Bonferroni correction GenBank ID Description
01 METABOLISM
17946_s_at At1g03410 2.84132E-06 0.0213326 gb|AAB97721.1| 2-Oxoglutarate-dependent dioxygenase, putative
19689_at At5g24140 7.0739E-07 0.0053111 emb|CAA06771.1| Squalene monooxygenase 2 (squalene epoxidase 2) (SQP2) (SE2)
12277_at At1g47600 6.47203E-07 0.0048592 gb|AAD46026.1| Glycosyl hydrolase family 1, similar to thioglucosidase
18836_at At2g24710 5.09671E-06 0.0382661 gb|AAD26894.1| Plant glutamate receptor family (GLR2.3)
17620_s_at At2g42990 3.79611E-06 0.0285012 gb|AAD21711.1| GDSL-motif lipase/hydrolase protein similar to family II lipase EXL3
20514_i_at At2g15370 1.35384E-08 0.0001016 gb|AAD22287.1| Similar to xyloglucan fucosyltransferase
02 ENERGY      
12277_at At1g47600 6.47203E-07 0.0048592 gb|AAD46026.1| Glycosyl hydrolase family 1, similar to thioglucosidase
10 CELL CYCLE AND DNA PROCESSING
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
15785_g_at At1g08840 2.79162E-06 0.0209595 gb|AAB70418.1| Hypothetical protein gene overlaps Sp6 end of F7G19
11 TRANSCRIPTION      
12869_s_at At4g11880 3.45683E-06 0.0259539 gb|AAC49082.1| MADS-box protein AGL14
16072_s_at At5g65790 2.97265E-06 0.0223187 gb|AAC83623.1| Identical to putative transcription factor (MYB68)
13575_at At4g03430 6.50883E-06 0.0488683 gb|AAD11585.1| Similar to yeast pre-mRNA splicing factors
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1|  
12366_s_at At4g11880 2.5787E-06 0.0193608 emb|CAB44326.1| MADS-box protein AGL14
14885_at At4g21340 2.22259E-06 0.0166872 emb|CAA20199.1| Expressed protein, putative bHLH transcription factor (bHLH103)
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
19244_s_at At2g04230 2.84687E-06 0.0213743 gb|AAD27915.1| F-box protein family, contains F-box domain
19279_i_at At4g21040 7.07742E-07 0.0053137 emb|CAB45899.1| Dof zinc finger protein, finger protein rolB
13306_at At2g41070 4.38217E-06 0.0329013 gb|AAD12004.1| bZIP family transcription factor, contains a bZIP transcription factor basic domain signature
13343_at At1g34310 4.60448E-08 0.0003457 gb|AAD39615.1| Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
15224_at At1g61540 8.21522E-08 0.0006168 gb|AAD25554.1| Kelch repeat containing F-box protein family low similarity to SKP1 interacting partner 6
15227_at At2g01280 5.89076E-06 0.0442278 gb|AAD14528.1| Transcription factor -related, putative transcription factor IIIB 70 KD subunit (TFIIIB)
16263_at At2g02320 3.12005E-06 0.0234253 gb|AAC78515.1| F-box protein (SKP1 interacting partner 3-related)
17145_at At1g10110 6.9462E-08 0.0005215 gb|AAC34337.1| Contains Pfam PF00646: F-box domain; similar to F-box protein family, AtFBX7
13863_at At2g21470 9.36899E-07 0.0070342 gb|AAD23691.1| Nearly identical to SUMO activating enzyme 2 (SAE2)
12599_at At2g29910 2.33543E-10 0.0000018 gb|AAD23631.1| F-box protein family contains F-box domain Pfam:PF00646
12913_at At4g32880 1.90072E-06 0.0142706 emb|CAA90703.1| Identical to HD-zip transcription factor (athb-8)
13216_s_at At1g26310 8.05827E-07 0.0060501 gb|AAA64789.1| Floral regulatory gene CAULIFLOWER
12863_r_at At4g18960 1.05463E-06 0.0079181 emb|X53579.1| Floral homeotic protein agamous (AGAMOUS)
14 PROTEIN FATE (folding, modification, destination)
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1| Pseudogene, putative GTP-binding protein
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
13863_at At2g21470 9.36899E-07 0.0070342 gb|AAD23691.1| Nearly identical to SUMO activating enzyme 2 (SAE2)
16 PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic)
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1|  
18836_at At2g24710 5.09671E-06 0.0382661 gb|AAD26894.1| Plant glutamate receptor family (GLR2.3)
16262_at At2g46850 4.75288E-06 0.0356846 gb|AAC34215.2| Ser/Thr protein kinase -related
20 CELLULAR TRANSPORT, TRANSPORT FACILITATION AND TRANSPORT ROUTES
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1| Pseudogene, putative GTP-binding protein
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
18836_at At2g24710 5.09671E-06 0.0382661 gb|AAD26894.1| Plant glutamate receptor family (GLR2.3)
17618_at At2g31910 3.44193E-06 0.0258420 gb|AAD32281.1| Similar to monovalent cation:proton antiporter family 2
30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1| Pseudogene, putative GTP-binding protein
16816_at At1g19230 5.65137E-06 0.0424305 gb|AAC39478.1| Respiratory burst oxidase protein E (NADPH oxidase) (RbohE)
18836_at At2g24710 5.09671E-06 0.0382661 gb|AAD26894.1| Plant glutamate receptor family (GLR2.3)
19311_g_at At2g41210 1.643E-06 0.0123356 gb|AAC78530.2| Phosphatidylinositol-4-phosphate 5-kinase -related
13343_at At1g34310 4.60448E-08 0.0003457 gb|AAD39615.1| Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
15787_s_at At1g09090 3.64297E-07 0.0027351 gb|AAB70399.1| Respiratory burst oxidase protein B (NADPH oxidase) (RbohB)
16262_at At2g46850 4.75288E-06 0.0356846 gb|AAC34215.2| Ser/Thr protein kinase -related
32 CELL RESCUE, DEFENSE AND VIRULENCE
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1| Pseudogene, putative GTP-binding protein
12111_s_at At4g19240 3.30499E-07 0.0024814 emb|CAA18611.1| Expressed protein
12258_s_at At4g14370 6.60533E-06 0.0495928 emb|CAB10216.1| Disease resistance protein (TIR-NBS-LRR class)
12277_at At1g47600 6.47203E-07 0.0048592 gb|AAD46026.1| Glycosyl hydrolase family 1, similar to thioglucosidase
12956_i_at At1g05170 3.64708E-06 0.0273823 gb|AAB71461.1| Galactosyltransferase family
16375_at At1g54480 6.28683E-06 0.0472015 gb|AAD25626.1| Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains
16816_at At1g19230 5.65137E-06 0.0424305 gb|AAC39478.1| Respiratory burst oxidase protein E (NADPH oxidase) (RbohE)
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
19244_s_at At2g04230 2.84687E-06 0.0213743 gb|AAD27915.1| F-box protein family, contains F-box domain
15224_at At1g61540 8.21522E-08 0.0006168 gb|AAD25554.1| Kelch repeat containing F-box protein family low similarity to SKP1 interacting partner 6
15787_s_at At1g09090 3.64297E-07 0.0027351 gb|AAB70399.1| Respiratory burst oxidase protein B (NADPH oxidase) (RbohB)
16263_at At2g02320 3.12005E-06 0.0234253 gb|AAC78515.1| F-box protein (SKP1 interacting partner 3-related)
17145_at At1g10110 6.9462E-08 0.0005215 gb|AAC34337.1| Contains Pfam PF00646: F-box domain; similar to F-box protein family, AtFBX7
12599_at At2g29910 2.33543E-10 0.0000018 gb|AAD23631.1| F-box protein family contains F-box domain Pfam:PF00646
34 INTERACTION WITH THE CELLULAR ENVIRONMENT
16816_at At1g19230 5.65137E-06 0.0424305 gb|AAC39478.1| Respiratory burst oxidase protein E (NADPH oxidase) (RbohE)
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
15787_s_at At1g09090 3.64297E-07 0.0027351 gb|AAB70399.1| Respiratory burst oxidase protein B (NADPH oxidase) (RbohB)
36 INTERACTION WITH THE ENVIRONMENT (systemic)
17946_s_at At1g03410 2.84132E-06 0.0213326 gb|AAB97721.1| 2-Oxoglutarate-dependent dioxygenase, putative
38 TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS
16731_at At2g11690 1.06284E-06 0.0079798 gb|AAD28679.1| Pseudogene
18340_at At4g07700 2.79501E-06 0.0209849 gb|AAD29786.1| Athila transposon protein -related
40 CELL FATE
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
41 DEVELOPMENT (systemic)
17677_at At1g03910 1.54447E-06 0.0115959 gb|AAD10685.1| Hypothetical protein
13216_s_at At1g26310 8.05827E-07 0.0060501 gb|AAA64789.1| Floral regulatory gene CAULIFLOWER
12863_r_at At4g18960 1.05463E-06 0.0079181 emb|X53579.1| Floral homeotic protein agamous (AGAMOUS)
42 BIOGENESIS OF CELLULAR COMPONENTS
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1| Pseudogene, putative GTP-binding protein
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
13343_at At1g34310 4.60448E-08 0.0003457 gb|AAD39615.1| Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
43 CELL TYPE DIFFERENTIATION
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1| Pseudogene, putative GTP-binding protein
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
70 SUBCELLULAR LOCALIZATION
19689_at At5g24140 7.0739E-07 0.0053111 emb|CAA06771.1| Squalene monooxygenase 2 (squalene epoxidase 2) (SQP2) (SE2)
20254_at At2g22390 2.41214E-06 0.0181104 gb|AAD22360.1| Pseudogene, putative GTP-binding protein
18830_at At2g32790 1.27302E-06 0.0095579 gb|AAC04484.1| Ubiquitin-conjugating enzyme
18836_at At2g24710 5.09671E-06 0.0382661 gb|AAD26894.1| Plant glutamate receptor family (GLR2.3)
13343_at At1g34310 4.60448E-08 0.0003457 gb|AAD39615.1| Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
13863_at At2g21470 9.36899E-07 0.0070342 gb|AAD23691.1| Nearly identical to SUMO activating enzyme 2 (SAE2)
15785_g_at At1g08840 2.79162E-06 0.0209595 gb|AAB70418.1| Hypothetical protein gene overlaps Sp6 end of F7G19
13216_s_at At1g26310 8.05827E-07 0.0060501 gb|AAA64789.1| Floral regulatory gene CAULIFLOWER
14356_at At5g59370 3.6446E-08 0.0002736 gb|AAB39403.1| Identical to SP|P53494 Actin 4
12863_r_at At4g18960 1.05463E-06 0.0079181 emb|X53579.1| Floral homeotic protein agamous (AGAMOUS)
No hits to TIGR gene prediction
20512_at 4.2379E-07 0.0031818 gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4 map CIC10A06, complete  
18049_s_at 5.37206E-07 0.0040333 emb|AJ132404.1| Arabidopsis thaliana anti-sense transcript, AKL kinase-like gene