| pCRM | Name | CRM activity | pCRM length (D. melanogaster) | pCRM length (D. pseudoobscura) | Percent identity | D. melanogaster sites | D. pseudoobscura sites | Conserved sites | Fraction conserved | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  |  |  |  |  | A | A+P | A | A+P |
1 | PCE7001 | runt stripe 3 | + | 1,089 | 1,504 | 71% | 27 | 20 | 11 | 20 | 41% | 74% |
2 | PCE7002 | eve stripes 3/7 | + | 1,278 | 1,114 | 61% | 28 | 25 | 21 | 25 | 75% | 89% |
3 | PCE7003 | eve stripe 2 | + | 587 | 771 | 67% | 14 | 10 | 9 | 10 | 64% | 71% |
4 | PCE7004 | eve stripes 4/6 | + | 799 | 1,003 | 70% | 20 | 18 | 13 | 17 | 65% | 85% |
5 | PCE7005 | hairy stripe 7 | + | 895 | 869 | 66% | 20 | 16 | 12 | 16 | 60% | 80% |
6 | PCE7006 | hairy stripe 6 | + | 868 | 952 | 62% | 23 | 19 | 11 | 19 | 48% | 83% |
7 | PCE7007 | hairy stripes 1,5 | + | 787 | 723 | 56% | 16 | 15 | 9 | 13 | 56% | 81% |
8 | PCE7008 | kni upstream | + | 1,356 | 1,654 | 68% | 33 | 31 | 24 | 30 | 73% | 91% |
9 | PCE7009 | hb HZ1.4 | + | 1,207 | 1,383 | 69% | 24 | 23 | 17 | 21 | 71% | 88% |
10 | PCE8001 | gt posterior domain | + | 944 | 1,092 | 64% | 23 | 19 | 15 | 18 | 65% | 78% |
11 | PCE8010 | odd stripes 3/6 | + | 760 | 825 | 70% | 17 | 19 | 12 | 16 | 71% | 94% |
12 | PCE8011 | nub blastoderm | + | 695 | 894 | 70% | 18 | 13 | 10 | 12 | 56% | 67% |
13 | PCE8024 | ftz stripes 1/5 | + | 693 | 744 | 77% | 14 | 10 | 10 | 10 | 71% | 71% |
14 | PCE8012 | pdm2 neurogenic | + | 723 | 723 | 72% | 14 | 8 | 4 | 8 | 29% | 57% |
15 | PCE8027 | sqz neurogenic | + | 810 | 818 | 69% | 16 | 17 | 11 | 14 | 69% | 88% |
16 | PCE8005 | cluster_at_7A | amb. | 548 | 819 | 54% | 13 | 4 | 2 | 2 | 15% | 15% |
17 | PCE8016 | cluster_at_55C | amb. | 703 | 1,617 | 55% | 16 | 6 | 3 | 6 | 19% | 38% |
18 | PCE8020 | cluster_at_70F | amb. | 710 | 538 | 47% | 14 | 2 | 2 | 2 | 14% | 14% |
19 | PCE8006 | cluster_at_7B | - | 639 | 663 | 69% | 15 | 9 | 8 | 8 | 53% | 53% |
20 | PCE8008 | cluster_at_8F | - | 745 | 716 | 58% | 14 | 2 | 1 | 2 | 7% | 14% |
21 | PCE8013 | cluster_at_34E | - | 850 | 919 | 61% | 17 | 8 | 6 | 8 | 35% | 47% |
22 | PCE8014 | cluster_at_36F | - | 701 | 596 | 53% | 15 | 6 | 5 | 6 | 33% | 40% |
23 | PCE8015 | cluster_at_47A | - | 655 | 652 | 66% | 16 | 3 | 3 | 3 | 19% | 19% |
24 | PCE8017 | cluster_at_56B | - | 633 | 331 | 33% | 15 | 9 | 4 | 8 | 27% | 53% |
25 | PCE8018 | cluster_at_59B | - | 716 | 960 | 59% | 16 | 4 | 3 | 4 | 19% | 25% |
26 | PCE8019 | cluster_at_67B | - | 667 | 675 | 62% | 15 | 7 | 5 | 6 | 33% | 40% |
27 | PCE8021 | cluster_at_75C | - | 752 | 640 | 59% | 19 | 13 | 10 | 12 | 53% | 63% |
28 | PCE8022 | cluster_at_76C | - | 704 | 725 | 67% | 15 | 9 | 7 | 9 | 47% | 60% |
29 | PCE8023 | cluster_at_84A | - | 765 | 1,001 | 55% | 16 | 7 | 5 | 7 | 31% | 44% |
30 | PCE8025 | cluster_at_85C | - | 838 | 827 | 54% | 16 | 6 | 1 | 5 | 6% | 31% |
31 | PCE8026 | cluster_at_88F | - | 682 | 1,096 | 62% | 16 | 6 | 5 | 5 | 31% | 31% |
32 | PCE8028 | cluster_at_95C | - | 624 | 723 | 60% | 15 | 6 | 4 | 6 | 27% | 40% |
33 | PCE8003 | cluster_at_5C.1 | - | 628 | None | Â | 15 | Â | Â | Â | Â | Â |
34 | PCE8004 | cluster_at_5C.2 | - | 694 | None | Â | 15 | Â | Â | Â | Â | Â |
35 | PCE8009 | cluster_at_12E | - | 663 | None | Â | 15 | Â | Â | Â | Â | Â |
36 | PCE8002 | cluster_at_4B | - | 1,341 | None | Â | 28 | Â | Â | Â | Â | Â |
37 | PCE8007 | cluster_at_7F | Unknown | 658 | None | Â | 15 | Â | Â | Â | Â | Â |
 | Mean (pCRMs 1-15) |  | 899 | 1,005 | 67% | 20 | 18 | 13 | 17 | 61% | 80% | |
 | Mean (pCRMs 19-32) |  | 712 | 752 | 58% | 16 | 7 | 5 | 6 | 30% | 40% |