From: Model selection and efficiency testing for normalization of cDNA microarray data
Experiment | No normalization | Linear normalization | Global lowess | P-lowess | S-lowess | LIN | OLIN | OSLIN | |
---|---|---|---|---|---|---|---|---|---|
Intensity-dependent cor(M, ) | SW480/620 | 0.50 | 0.50 | 0.01 | -0.01 | -0.01 | 0.04 | 0.00 | 0.00 |
Intensity-dependent cor(M, ) | Apo AI | 0.47 | 0.47 | 0.06 | 0.05 | 0.05 | 0.09 | 0.00 | 0.00 |
Spatial cor(M, ) | SW480/620 | 0.53 | 0.53 | 0.56 | 0.34 | 0.32 | 0.27 | 0.07 | 0.08 |
Spatial cor(M, ) | Apo AI | 0.58 | 0.58 | 0.59 | 0.41 | 0.38 | 0.43 | 0.15 | 0.15 |
Mean pairwise cor(M) | SW480/620 | 0.46 | 0.46 | 0.50 | 0.59 | 0.59 | 0.63 | 0.67 | 0.64 |
Var(M) | SW480/620 | 927.1 | 658.7 | 455.4 | 216.3 | 213.0 | 205.7 | 163.0 | 186.5 |
Number of significant genes | SW480/620 | 26 | 71 | 51 | 75 | 88 | 94 | 99 | 129 |
Average cor(MqPCR, Mma) | Fibroblast | 0.82 | 0.81 | 0.82 | 0.82 | 0.81 | 0.81 | 0.84 | 0.88 |