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Table 3 Predicted transcriptional regulators

From: Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1

Protein

Cluster number

CATH ID

Z-score

Confidence

Other hits

Winged helix repressor DNA binding domain

VNG0389C

1

1.10.10.10

6.55

0.343

Weak FFAS hit to 1mzbA (ferric uptake gene regulator)

 

2

1.10.10.10

7.40

0.4

 
 

4

1.10.10.10

6.76

0.357

 

VNG2614H

1

1.10.10.10

6.64

0.313

PSI-BLAST to 1jgsA (winged helix, MarR)

 

4

1.10.10.60

7.12

0.419

 
 

5

1.10.10.10

8.09

0.469

 

VNG0768H

1

1.10.10.10

7.14

0.385

Not applicable

 

9

1.10.10.10

8.09

0.481

 

VNG2369C

1

1.10.10.10

7.14

0.323

Not applicable

 

5

1.10.10.10

7.69

0.424

 

VNG2641H

1

1.10.10.10

7.58

0.321

Not applicable

VNG1640H

1

1.10.10.10

7.86

0.34

Not applicable

VNG5156H

2

1.10.10.10

7.94

0.401

Weak FFAS hit to 1i1gA (LRP-like transcriptional regulator)

 

3

1.10.10.10

9.36

0.502

 
 

4

1.10.10.10

8.55

0.444

 

VNG5108H

14

1.10.10.10

8.04

0.388

Not applicable

VNG6047H

1

1.10.10.10

8.15

0.446

Weak FFAS hit to 1id3D (histone fold)

 

3

1.10.10.60

8.69

0.524

 
 

14

1.10.10.10

10.03

0.58

 

VNG0703H

1

1.10.10.10

8.17

0.439

PSI-BLAST to 1i1gA (LPR-like regulator)

 

2

1.10.10.10

7.56

0.37

 
 

4

1.10.10.10

7.88

0.428

 
 

5

1.10.10.10

7.16

0.369

 
 

6

1.10.10.10

8.96

0.505

 

VNG0462C

1

1.10.10.10

8.42

0.527

PSI-BLAST to 1lnwA (mexR repressor, winged helix fold) PSI-BLAST to ArsR

 

2

1.10.10.10

9.77

0.621

 
 

4

1.10.10.10

7.66

0.489

 
 

5

1.10.10.10

8.57

0.545

 

VNG2014H

14

1.10.10.10

8.72

0.379

Not applicable

VNG1229H

1

1.10.10.10

8.80

0.463

Not applicable

 

4

1.10.10.10

7.95

0.339

 

VNG0837H

2

1.10.10.10

9.02

0.476

Not applicable

 

4

1.10.10.10

7.53

0.377

 
 

5

1.10.10.10

8.39

0.436

 

VNG6479H

1

1.10.10.10

9.29

0.53

Not applicable

VNG0039H

1

1.10.10.10

9.36

0.478

 
 

2

1.10.10.10

8.60

0.438

Weak FFAS hit to 1mkmA (transcriptional regulator IclR, amino-terminal domain)

 

3

1.10.10.10

9.28

0.438

 
 

5

1.10.10.10

9.96

0.522

 

Homeodomain-like superfamily

VNG0293H

3

1.10.10.60

6.14

0.395

PSI-BLAST to 1i1gA (LPR-like regulator)

 

4

1.10.10.10

7.01

0.427

 
 

5

1.10.10.10

6.63

0.393

 

VNG2074H

11

1.10.10.60

7.09

0.354

Not applicable

 

1

1.10.10.60

6.03

0.286

 

VNG6251H

3

1.10.10.60

8.06

0.378

TMHMM predicts 1 TM helix

Cyclin A, domain 1 fold

VNG2133H

2

1.10.472.10

8.25

0.351

Not applicable

VNG6287H

15

1.10.472.10

9.14

0.306

Weak FFAS hit to 1smt-A (SMTB repressor)

 

4

1.10.472.10

8.93

0.283

 
 

2

1.10.472.10

8.50

0.269

 

VNG0511H

8

1.10.472.10

9.25

0.512

PSI-BLAST hit to 1i1gA

VNG1865H

8

1.10.472.10

9.55

0.365

Not applicable

 

4

1.10.472.10

7.18

0.18

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