Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis

Brunelle, Brian W; Nicholson, Tracy L; Stephens, Richard S

doi:10.1186/gb-2004-5-6-r42

Table 1 The ten highest-ranked signal ratios and their corresponding genes for each serovar

From: Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis

Rank	Gene	SR*		SEM^†	Gene	SR		SEM	Gene	SR		SEM
	A/Har-1				B/TW-5				Ba/Apache-2
1	166	4.04	±	0.63	163	8.21	±	2.78	870 (pmpF)	3.39	±	0.39
2	681 (ompA)	3.91	±	0.34	166	6.65	±	0.87	861	2.77	±	0.16
3	679 (tsf)	3.56	±	0.15	164	4.29	±	0.46	851 (map)	2.73	±	0.25
4	622	2.93	±	0.21	167	4.09	±	0.50	166	2.67	±	0.19
5	51	2.84	±	0.06	171 (trpA)	4.02	±	0.73	860	2.63	±	0.23
6	688 (parB)	2.81	±	0.10	165	3.89	±	0.56	874 (pmpI)	2.61	±	0.16
7	870 (pmpF)	2.76	±	0.16	170 (trpB)	3.81	±	0.41	688 (parB)	2.60	±	0.25
8	161	2.72	±	0.11	162	3.80	±	0.28	792 (mutS)	2.60	±	0.32
9	49	2.55	±	0.18	168	2.94	±	0.19	852 (yhgN)	2.58	±	0.32
10	672 (fliN)	2.53	±	0.19	207 (pfkA)	2.90	±	1.21	855 (fumC)	2.58	±	0.20
	C/TW-3				E/Bour				F/IC-CAL3
1	166	3.66	±	0.29	675 (karG)	3.60	±	0.25	680 (rs2)	6.28	±	1.69
2	681 (ompA)	2.59	±	0.31	161	3.40	±	0.33	679 (tsf)	4.48	±	0.17
3	672 (fliN)	2.40	±	0.15	870 (pmpF)	3.37	±	0.20	681 (ompA)	3.45	±	0.17
4	864 (xerC/D)	2.39	±	0.11	688 (parB)	3.33	±	0.21	677 (frr)	3.17	±	0.34
5	161	2.38	±	0.14	792 (mutS)	3.32	±	0.31	873	2.87	±	0.09
6	860	2.37	±	0.16	836 (pheS)	3.20	±	0.10	649 (ygfA)	2.53	±	0.08
7	696	2.35	±	0.10	839	3.11	±	0.16	622	2.24	±	0.17
8	675 (karG)	2.30	±	0.11	694	3.11	±	0.34	696	2.19	±	0.12
9	694	2.28	±	0.07	686	3.10	±	0.16	49	2.04	±	0.22
10	688 (parB)	2.28	±	0.06	761 (murG)	3.07	±	0.08	429	1.94	±	0.20
	G/UW-57				H/UW-4				I/UW-12
1	681 (ompA)	5.12	±	0.69	161	2.77	±	0.16	870 (pmpF)	3.80	±	0.08
2	696	2.30	±	0.03	622	2.65	±	0.12	792 (mutS)	3.15	±	0.18
3	291 (ptsN)	2.23	±	0.22	761 (murG)	2.58	±	0.16	161	3.12	±	0.09
4	674 (yscC)	2.10	±	0.13	839	2.53	±	0.18	360	3.09	±	0.03
5	175 (oppA)	2.10	±	0.08	427	2.40	±	0.11	686	2.97	±	0.18
6	84	2.07	±	0.01	870 (pmpF)	2.38	±	0.09	840 (mesJ)	2.94	±	0.17
7	539 (trxA)	2.03	±	0.21	675 (karG)	2.38	±	0.08	812 (pmpD)	2.93	±	0.32
8	475 (pheT)	2.00	±	0.83	688 (parB)	2.30	±	0.09	688 (parB)	2.91	±	0.11
9	672 (fliN)	1.99	±	0.08	216 (xasA)	2.29	±	0.08	49	2.90	±	0.14
10	385 (ycfF)	1.97	±	0.36	783	2.29	±	0.22	598	2.89	±	0.34
	J/UW-36				K/UW-31				L1/440
1	369 (aroB)	3.83	±	0.30	681 (ompA)	8.45	±	1.42	166	3.45	±	0.38
2	427	3.76	±	0.23	84	4.07	±	0.48	870 (pmpF)	3.01	±	0.34
3	476	3.72	±	0.37	175 (oppA)	2.86	±	0.31	161	2.72	±	0.28
4	870 (pmpF)	3.64	±	0.25	291 (ptsN)	2.37	±	0.10	760 (ftsW)	2.69	±	0.20
5	792 (mutS)	3.53	±	0.12	696	2.29	±	0.09	868	2.66	±	0.16
6	360	3.48	±	0.15	557 (lpdA)	2.26	±	0.09	167	2.59	±	0.08
7	836 (pheS)	3.40	±	0.18	298 (sms)	2.17	±	0.11	144	2.59	±	0.12
8	797 (pgsA)	3.38	±	0.29	577	2.14	±	0.19	872 (pmpH)	2.53	±	0.21
9	839	3.35	±	0.08	656	2.12	±	0.11	761 (murG)	2.47	±	0.13
10	507 (rpoA)	3.33	±	0.14	461 (yaeI)	2.07	±	0.11	839	2.46	±	0.09
	L2/434				L3/404
1	166	9.90	±	1.26	166	11.61	±	0.29
2	167	5.72	±	1.23	681 (ompA)	6.46	±	0.39
3	84	5.68	±	1.12	167	6.15	±	0.46
4	165	5.27	±	1.60	165	4.93	±	0.55
5	173	3.82	±	0.50	622	3.85	±	0.23
6	681 (ompA)	3.25	±	0.37	173	3.69	±	0.23
7	144	3.23	±	0.21	144	3.67	±	0.32
8	622	3.09	±	0.12	619	3.23	±	0.05
9	619	2.95	±	0.29	870 (pmpF)	2.71	±	0.19
10	870 (pmpF)	2.57	±	0.05	293 (accD)	2.65	±	0.03

*Average signal ratio; ^†Standard error of the mean.

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