From: Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis
Rank | Gene | SR* |  | SEM†| Gene | SR |  | SEM | Gene | SR |  | SEM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | A/Har-1 |  |  |  | B/TW-5 |  |  |  | Ba/Apache-2 |  |  |  |
1 | 166 | 4.04 | ± | 0.63 | 163 | 8.21 | ± | 2.78 | 870 (pmpF) | 3.39 | ± | 0.39 |
2 | 681 (ompA) | 3.91 | ± | 0.34 | 166 | 6.65 | ± | 0.87 | 861 | 2.77 | ± | 0.16 |
3 | 679 (tsf) | 3.56 | ± | 0.15 | 164 | 4.29 | ± | 0.46 | 851 (map) | 2.73 | ± | 0.25 |
4 | 622 | 2.93 | ± | 0.21 | 167 | 4.09 | ± | 0.50 | 166 | 2.67 | ± | 0.19 |
5 | 51 | 2.84 | ± | 0.06 | 171 (trpA) | 4.02 | ± | 0.73 | 860 | 2.63 | ± | 0.23 |
6 | 688 (parB) | 2.81 | ± | 0.10 | 165 | 3.89 | ± | 0.56 | 874 (pmpI) | 2.61 | ± | 0.16 |
7 | 870 (pmpF) | 2.76 | ± | 0.16 | 170 (trpB) | 3.81 | ± | 0.41 | 688 (parB) | 2.60 | ± | 0.25 |
8 | 161 | 2.72 | ± | 0.11 | 162 | 3.80 | ± | 0.28 | 792 (mutS) | 2.60 | ± | 0.32 |
9 | 49 | 2.55 | ± | 0.18 | 168 | 2.94 | ± | 0.19 | 852 (yhgN) | 2.58 | ± | 0.32 |
10 | 672 (fliN) | 2.53 | ± | 0.19 | 207 (pfkA) | 2.90 | ± | 1.21 | 855 (fumC) | 2.58 | ± | 0.20 |
 | C/TW-3 |  |  |  | E/Bour |  |  |  | F/IC-CAL3 |  |  |  |
1 | 166 | 3.66 | ± | 0.29 | 675 (karG) | 3.60 | ± | 0.25 | 680 (rs2) | 6.28 | ± | 1.69 |
2 | 681 (ompA) | 2.59 | ± | 0.31 | 161 | 3.40 | ± | 0.33 | 679 (tsf) | 4.48 | ± | 0.17 |
3 | 672 (fliN) | 2.40 | ± | 0.15 | 870 (pmpF) | 3.37 | ± | 0.20 | 681 (ompA) | 3.45 | ± | 0.17 |
4 | 864 (xerC/D) | 2.39 | ± | 0.11 | 688 (parB) | 3.33 | ± | 0.21 | 677 (frr) | 3.17 | ± | 0.34 |
5 | 161 | 2.38 | ± | 0.14 | 792 (mutS) | 3.32 | ± | 0.31 | 873 | 2.87 | ± | 0.09 |
6 | 860 | 2.37 | ± | 0.16 | 836 (pheS) | 3.20 | ± | 0.10 | 649 (ygfA) | 2.53 | ± | 0.08 |
7 | 696 | 2.35 | ± | 0.10 | 839 | 3.11 | ± | 0.16 | 622 | 2.24 | ± | 0.17 |
8 | 675 (karG) | 2.30 | ± | 0.11 | 694 | 3.11 | ± | 0.34 | 696 | 2.19 | ± | 0.12 |
9 | 694 | 2.28 | ± | 0.07 | 686 | 3.10 | ± | 0.16 | 49 | 2.04 | ± | 0.22 |
10 | 688 (parB) | 2.28 | ± | 0.06 | 761 (murG) | 3.07 | ± | 0.08 | 429 | 1.94 | ± | 0.20 |
 | G/UW-57 |  |  |  | H/UW-4 |  |  |  | I/UW-12 |  |  |  |
1 | 681 (ompA) | 5.12 | ± | 0.69 | 161 | 2.77 | ± | 0.16 | 870 (pmpF) | 3.80 | ± | 0.08 |
2 | 696 | 2.30 | ± | 0.03 | 622 | 2.65 | ± | 0.12 | 792 (mutS) | 3.15 | ± | 0.18 |
3 | 291 (ptsN) | 2.23 | ± | 0.22 | 761 (murG) | 2.58 | ± | 0.16 | 161 | 3.12 | ± | 0.09 |
4 | 674 (yscC) | 2.10 | ± | 0.13 | 839 | 2.53 | ± | 0.18 | 360 | 3.09 | ± | 0.03 |
5 | 175 (oppA) | 2.10 | ± | 0.08 | 427 | 2.40 | ± | 0.11 | 686 | 2.97 | ± | 0.18 |
6 | 84 | 2.07 | ± | 0.01 | 870 (pmpF) | 2.38 | ± | 0.09 | 840 (mesJ) | 2.94 | ± | 0.17 |
7 | 539 (trxA) | 2.03 | ± | 0.21 | 675 (karG) | 2.38 | ± | 0.08 | 812 (pmpD) | 2.93 | ± | 0.32 |
8 | 475 (pheT) | 2.00 | ± | 0.83 | 688 (parB) | 2.30 | ± | 0.09 | 688 (parB) | 2.91 | ± | 0.11 |
9 | 672 (fliN) | 1.99 | ± | 0.08 | 216 (xasA) | 2.29 | ± | 0.08 | 49 | 2.90 | ± | 0.14 |
10 | 385 (ycfF) | 1.97 | ± | 0.36 | 783 | 2.29 | ± | 0.22 | 598 | 2.89 | ± | 0.34 |
 | J/UW-36 |  |  |  | K/UW-31 |  |  |  | L1/440 |  |  |  |
1 | 369 (aroB) | 3.83 | ± | 0.30 | 681 (ompA) | 8.45 | ± | 1.42 | 166 | 3.45 | ± | 0.38 |
2 | 427 | 3.76 | ± | 0.23 | 84 | 4.07 | ± | 0.48 | 870 (pmpF) | 3.01 | ± | 0.34 |
3 | 476 | 3.72 | ± | 0.37 | 175 (oppA) | 2.86 | ± | 0.31 | 161 | 2.72 | ± | 0.28 |
4 | 870 (pmpF) | 3.64 | ± | 0.25 | 291 (ptsN) | 2.37 | ± | 0.10 | 760 (ftsW) | 2.69 | ± | 0.20 |
5 | 792 (mutS) | 3.53 | ± | 0.12 | 696 | 2.29 | ± | 0.09 | 868 | 2.66 | ± | 0.16 |
6 | 360 | 3.48 | ± | 0.15 | 557 (lpdA) | 2.26 | ± | 0.09 | 167 | 2.59 | ± | 0.08 |
7 | 836 (pheS) | 3.40 | ± | 0.18 | 298 (sms) | 2.17 | ± | 0.11 | 144 | 2.59 | ± | 0.12 |
8 | 797 (pgsA) | 3.38 | ± | 0.29 | 577 | 2.14 | ± | 0.19 | 872 (pmpH) | 2.53 | ± | 0.21 |
9 | 839 | 3.35 | ± | 0.08 | 656 | 2.12 | ± | 0.11 | 761 (murG) | 2.47 | ± | 0.13 |
10 | 507 (rpoA) | 3.33 | ± | 0.14 | 461 (yaeI) | 2.07 | ± | 0.11 | 839 | 2.46 | ± | 0.09 |
 | L2/434 |  |  |  | L3/404 |  |  |  |  |  |  |  |
1 | 166 | 9.90 | ± | 1.26 | 166 | 11.61 | ± | 0.29 |  |  |  |  |
2 | 167 | 5.72 | ± | 1.23 | 681 (ompA) | 6.46 | ± | 0.39 |  |  |  |  |
3 | 84 | 5.68 | ± | 1.12 | 167 | 6.15 | ± | 0.46 |  |  |  |  |
4 | 165 | 5.27 | ± | 1.60 | 165 | 4.93 | ± | 0.55 |  |  |  |  |
5 | 173 | 3.82 | ± | 0.50 | 622 | 3.85 | ± | 0.23 |  |  |  |  |
6 | 681 (ompA) | 3.25 | ± | 0.37 | 173 | 3.69 | ± | 0.23 |  |  |  |  |
7 | 144 | 3.23 | ± | 0.21 | 144 | 3.67 | ± | 0.32 |  |  |  |  |
8 | 622 | 3.09 | ± | 0.12 | 619 | 3.23 | ± | 0.05 |  |  |  |  |
9 | 619 | 2.95 | ± | 0.29 | 870 (pmpF) | 2.71 | ± | 0.19 |  |  |  |  |
10 | 870 (pmpF) | 2.57 | ± | 0.05 | 293 (accD) | 2.65 | ± | 0.03 |  |  |  |  |