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Table 6 Genes over-represented in primary and secondary metabolism funcats in InterAct class 111, model 3 where equal effects of carbon and light are observed

From: Genome-wide investigation of light and carbon signaling interactions in Arabidopsis

Primary funcat

Secondary funcat

Genes in InterAct Class 111 where over-representation of metabolism primary and secondary funcat are observed

 

InterAct class

    

C

C+L

L

Metabolism

C-compound/carbohydrate metabolism

Starch biosynthesis

    
  

Glucose-1-phosphate adenylyltransferase

At5g48300

   
  

*Starch branching enzyme II

At2g36390

   
  

1,4-alpha-glucan branching enzyme protein isoform SBE2

At5g03650

   
  

Cell wall

    
  

Cellulose synthetase catalytic subunit (AthA)

At4g39350

1

1

1

  

Unknown protein (putative pectate lyase A11)

At1g04680

   
  

Other

    
  

Glucose phosphomutase

At1g23190

   
  

Ribose-5-phosphate isomerase

At2g01290

   
  

Enoyl (ACP) reductase [NAD]

At2g05990

   
  

Lactate dehydrogenase (LDH1)

At4g17260

   
  

Unknown protein

At1g04680

   

Control of cellular organization

Cell wall

Spermine synthase and spermine

At1g23820

1

1

1

  

Expansin-like protein

At1g69530

   
  

Cellulose synthase catalytic subunit (Ath A)

At4g39350

   
  

Putative cinnamoyl CoA reductase

At2g33590

   
  

Unknown protein

At1g04680

   

Energy

Electron transport and membrane associated energy conservation

Nitrate reductase [NADH/NADPH]

At1g77760

1

1

1

  

Unknown protein

At1g68790

   
  

Putative protein

At1g64900

   
  1. *This gene, At2g36390, had two probe sets on the chip that were both assigned an InterAct class and a funcat. One probe was classified in InterAct class 111 and the other in InterAct class 122.