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Table 5 Significance of the number of genes in metabolism secondary funcats in InterAct classes 111 and -1-1-1 in model 3

From: Genome-wide investigation of light and carbon signaling interactions in Arabidopsis

  

L+C interactions under model 3 (equal effect of carbon and light)

  

C

C+L

L

C

C+L

L

  

1

1

1

-1

-1

-1

Funcat

Total number of genes

Number of genes

Number of genes

Total

1,898

85

39

Metabolism*

274

22+S

2

C-compound/carbohydrate metabolism

84

9+S

1

Amino-acid metabolism

44

2

0

Lipid, fatty-acid and isoprenoid metabolism

40

3

0

Nitrogen and sulfur metabolism

13

1

0

Secondary metabolism

47

4

1

Nucleotide metabolism

26

3

0

Metabolism of vitamins, co-factors and prosthetic groups

20

2

0

  1. +S means the particular funcat is significantly (p < 0.05) over-represented in InterAct class 111 or -1-1-1. Significance is only determined for the number of genes in InterAct classes 111 and -1-1-1 and not for the total number of genes in each functional category. * Metabolism is a primary funcat. Numbers in bold type are statistically significant.