Table 2 Number of genes validating InterAct classes
From: Genome-wide investigation of light and carbon signaling interactions in Arabidopsis
| Â | Class (39 validated/72 theoretical) | Number of genes (1,997/8,000) | Model | C+L response | ||
Row | C | C+L | L | Â | Â | Â |
1 | 0 | 0 | 0 | 467 | None | No effect |
2 | 1 | 1 | 0 | 143 | C-only | C-only |
3 | -1 | -1 | 0 | 58 | (201 genes) | Â |
4 | 0 | 1 | 1 | 65 | L-only | L-only |
5 | 0 | -1 | -1 | 12 | (77 genes) | Â |
L- and C-independent: model 1 | ||||||
6 | -1 | -2 | -1 | 129 | Repressive | Â |
7 | -2 | -3 | -1 | 70 | (model 1) | Â |
8 | -1 | -3 | -2 | 55 | (254 genes) | Â |
9 | 1 | 2 | 1 | 40 | Inductive | Â |
10 | 2 | 3 | 1 | 43 | (model 1) | Â |
11 | 1 | 3 | 2 | 14 | (97 genes) | Â |
12 | -1 | 0 | 1 | 27 | Antagonistic | Â |
13 | -1 | 1 | 2 | 23 | (model 1) | Â |
14 | -2 | -1 | 1 | 6 | (56 genes) | Â |
L- and C-dependent: model 2 | ||||||
15 | 0 | 1 | 0 | 19 | Dependent | Â |
16 | 0 | -1 | 0 | 13 | (model 2) (32 genes) | Â |
L- and C-dependent and independent: model 3 | ||||||
17 | 2 | 2 | 1 | 154 | C-dominates | C + L |
18 | -2 | -2 | -1 | 53 | (model 3) | responses |
19 | 0 | 0 | 1 | 15 | (235 genes) | (1,247 genes) |
20 | 0 | 0 | -1 | 13 | Â | Â |
21 | 1 | 0 | 0 | 54 | Â | Â |
22 | 1 | 2 | 2 | 45 | L-dominates | Â |
23 | -1 | 0 | 0 | 36 | (model 3) | Â |
24 | -1 | -2 | -2 | 27 | (173 genes) | Â |
25 | -1 | 1 | 1 | 6 | Â | Â |
26 | 2 | 1 | 1 | 5 | Â | Â |
27 | 1 | 1 | 1 | 86 | Equal effect | Â |
28 | -1 | -1 | -1 | 40 | (model 3) (126 genes) | Â |
29 | 2 | 1 | 0 | 92 | Â | Â |
30 | 3 | 2 | 1 | 46 | Â | Â |
31 | 0 | 1 | 2 | 47 | Suppressed | Â |
32 | -2 | -1 | 0 | 20 | (model 3) | Â |
33 | 1 | 2 | 3 | 14 | (229 genes) | Â |
34 | -3 | -2 | -1 | 6 | Â | Â |
35 | 0 | -1 | -2 | 4 | Â | Â |
36 | -1 | -2 | 0 | 29 | Enhanced | Â |
37 | 1 | 2 | 0 | 6 | (model 3) | Â |
38 | 0 | -2 | -1 | 6 | (45 genes) | Â |
39 | 0 | 2 | 1 | 4 | Â | Â |