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Table 1 InterAct classes that contain more than one gene

From: Genome-wide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants

CN model

 

Number of genes

InterAct class

   

C

N

CN

C+N

No effect

 

1,167

0

0

0

0

C-only

Inductive

1,011

1

0

1

1

 

Repressive

596

-1

0

-1

-1

N-only

Repressive

4

0

-1

-1

-1

 

C dominates

187

1

-1

1

1

  

156

-1

1

-1

-1

  

142

2

1

2

2

  

140

-2

-1

-2

-2

Model 1 (independent)

N dominates

3

-1

1

1

1

 

Equal effect

145

-1

-1

-1

-1

  

63

1

1

1

1

 

Antagonistic

6

2

-1

1

1

  

3

-2

1

-1

-1

 

Inductive

4

2

1

3

3

  

3

1

1

2

2

 

Repressive

3

-1

-1

-2

-2

  

2

-2

-1

-3

-3

Model 2 (dependent)

Inductive

7

0

0

1

0

 

Repressive

2

0

0

-1

0

Model 3 (dependent/ independent)

CN-enhanced

92

1

0

2

1

  

25

2

1

3

2

  

13

-1

-1

-1

-2

  

11

-2

-1

-2

-3

  

8

2

-1

2

1

  

8

1

-1

2

1

  

4

0

-1

0

-1

  

3

0

-1

1

-1

  

2

2

1

4

3

  

2

-3

-1

-2

-3

 

CN-suppressed

46

-2

1

-2

-1

  

17

-1

1

-1

0

  

9

-1

2

-1

1

  

9

-1

0

-2

-1

  

9

1

1

1

2

  

8

-1

1

-1

1

  

6

0

1

0

1

  

6

2

0

1

2

  

3

2

1

2

3

  

2

1

1

-1

1

  

2

-1

1

0

1

  

2

1

2

1

3

  

2

1

0

0

1

  

2

1

-1

-1

1

  

2

0

1

-1

1