Table 9 Candidate σ32-dependent promoters upstream of heat-shock genes
From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria
Gene | Operon | Site | Position* | Score |
|---|---|---|---|---|
Desulfovibrio vulgaris | ||||
206437 | dnaJ-?-clpA | gaTGAAt-[N 15 ]-CCCCtT | -114 | 5.43 |
206776 | ?-clp | gTTGttg-[N 15 ]-CCCCgT | -196 | 5.28 |
207035 | rpoH | aTTGAAA-[N 12 ]-aaCtAT | -110 | 5.71 |
207448 | groESL | CaTaAAA-[N 12 ]-CCCCtT | -239 | 5.23 |
Desulfovibrio desulfuricans | ||||
394616 | clpP-clpX-lon | CTTGAAc-[N 12 ]-CCCgAT | -82 | 6.45 |
394617 | clpX | CTTGAAA-[N 14 ]-aCCgAT | -136 | 6.94 |
394712 | rpoH | aTTGAAA-[N 12 ]-aaCtAT | -122 | 5.71 |
395109 | dnaJ-?-clpA | CTTGAAA-[N 13 ]-gaCggT | -81 | 5.16 |
gTTGcAg-[N 12 ]-CCgCAT | -57 | 5.28 | ||
395651 | dnaK | CTcGAAA-[N 14 ]-CCgCAg | -71 | 5.17 |
Desulfotalea psychrophila | ||||
422219 | groESL | aTTGAAA-[N 13 ]-CCCCtT | -201 | 6.33 |
CTTGAtt-[N 13 ]-aCCtAT | -134 | 5.98 | ||
423932 | grpE-dnaK | CaTGAAc-[N 12 ]-CtCCAT | -232 | 5.34 |
CTTGAcA-[N 13 ]-aCttAT | -135 | 5.67 | ||
424328 | dnaJ | gTTtAcA-[N 14 ]-gCCCAT | -113 | 5.62 |
CTTGAct-[N 14 ]-CCCtAa | -40 | 5.67 | ||
425016 | ?-clpP-clpX-lon | tTTGAtA-[N 11 ]-CCCaAg | -123 | 5.33 |
Geobacter sulfurreducens | ||||
380319 | dnaK-dnaJ | gTTGAgg-[N 14 ]-CCCaAT | -208 | 6.05 |
382089 | ?-clpP-clpX-lon | gTTcAAA-[N 12 ]-CCCCAT | -283 | 6.65 |
382697 | htpG | CTTGAAA-[N 11 ]-CatgAT | -75 | 5.85 |
Geobacter metallireducens | ||||
379288 | groESL | gaTGAAA-[N 12 ]-aCtCAT | -45 | 5.79 |
379647 | clpA | CTTGAct-[N 14 ]-gCCtAT | -58 | 5.72 |
379699 | ?-clpP-clpX-lon | gTTcAAA-[N 13 ]-CCCaAT | -280 | 5.96 |
Desulfuromonas species | ||||
388073 | clpP-clpX-lon | CTTGAAg-[N 14 ]-gCCaAT | -203 | 6.41 |
aTTGAAg-[N 14 ]-aCCtAT | -110 | 6.20 | ||
389722 | groESL | gTTGAgA-[N 14 ]-CCCCtT | -163 | 5.91 |