Table 8 Candidate CIRCE sites for the heat shock-responsive regulator HrcA
From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria
Gene | Operon | Site | Position* | Score |
|---|---|---|---|---|
Desulfovibrio vulgaris | ||||
207448 | groESL | cTgGCACTC-[N 9 ]-GAGTGCcAA | -68 | 6.53 |
Desulfovibrio desulfuricans | ||||
394393 | groESL | TTgGCACTC-[N 9 ]-GAGTGCTAA | -70 | 7.15 |
Geobacter sulfurreducens | ||||
380317 | hrcA-grpE-dnaK-dnaJ | TTAGCACTC-[N 9 ]-GAGTGCTAA | -49 | 7.50 |
380945 | rpoH | TTAGCACTC-[N 9 ]-GAGTGCTAA | -51 | 7.28 |
383663 | groESL | TTAGCACTC-[N 9 ]-GAGTGCTAA | -81 | 7.45 |
Geobacter metallireducens | ||||
379288 | groESL | TTAGCACTC-[N 9 ]-GAGTGCTAA | -80 | 7.41 |
379629 | hrcA-grpE-dnaK-dnaJ | TTAGCACTC-[N 9 ]-GAGTGCTAA | -45 | 7.29 |
Desulfuromonas species | ||||
387711 | hrcA-grpE-dnaK-dnaJ | TTAGCACTC-[N 9 ]-GAGTGCTAA | -85 | 7.06 |
389722 | groESL | TTAGCACTC-[N 9 ]-GAGTGCTAA | -99 | 7.20 |