Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Table 2 Candidate binding sites for the predicted lysine-specific regulator LysX*

Gene		Site	Position^†	Score
Desulfovibrio vulgaris
208064	lysX-lysA*	GTGGTACTAATcAGTACCAC	-277	6.82
206613	~mviN*	GTGGTtCTttgTAGTACtAC	-135	5.45
Desulfovibrio desulfuricans G20
394240	lysX-lysA*	GTaGTACTAAaTAGTACCAC	-43	6.70
393213	lysW*	GgcGTtCTAAagAGTACCAC	-145	5.88
394397	~mviN*	GTaGTtgTgATaAGaAaCAC	-275	4.70

^†Position relative to the start of translation. *New name introduced in this study. Lower case letters represent positions that do not conform to the consensus sequence.

ISSN: 1474-760X