Table 1 Candidate binding sites for the biotin repressor BirA
From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria
Gene | Site | Position* | Score | |
|---|---|---|---|---|
Desulfuromonas sp. | ||||
387978 | bioW | aTGTcAACC-[N 14 ]-GGTTgACAg | -63 | 8.61 |
390011 | bioB | acGTcAACC-[N 14 ]-GGTTgACAA | -94 | 8.13 |
Geobacter sulfurreducens PCA | ||||
381880 | bioB | TTGTcAACC-[N 14 ]-aGTTgACAA | -78 | 8.50 |
382941 | bioF | TTGTcAACC-[N 14 ]-GGTTgACgA | -182 | 8.29 |
Geobacter metallireducens | ||||
377241 | bioB | TTGTtAACC-[N 14 ]-aGTTgACAA | -76 | 7.81 |
377542 | bioF | TTGTcAACC-[N 14 ]-GGTTgACgA | -64 | 8.29 |
Desulfovibrio vulgaris | ||||
208055 | bioB | TTGTAAACC-[N 15 ]-cGTTgACAg | 6 | 8.39 |
Desulfovibrio desulfuricans G20 | ||||
394249 | bioB | TTGTAAACC-[N 15 ]-aGTTgACAA | -119 | 8.60 |
Desulfotalea psychrophila | ||||
425025 | bioB | TTGTAAAtt-[N 15 ]-ccaTTACAg | 233 | 6.19 |