From: A comparative proteomics resource: proteins of Arabidopsis thaliana
(a) Coverage | PAT | PEDANT/MatDB | TAIR/GO | EBI Proteomes/InterPro |
---|---|---|---|---|
 | 94% A-E | 30.9% PDB | 38% ALL | 77.3% InterPro |
 | 84% A-D | 26.7% SCOP | 14% Non-IEA | 0.07% PDB |
 | 65% A-C |  |  |  |
 | 46% A-B |  |  |  |
 | 38% A |  |  |  |
(b) Specific examples | Target | Other sources | PAT | |
 |  |  | Results | Reliability |
 | AP2 domain (1gcc) | 140 hits by BLAST against NR | 155 hits | C (90% certainty) or above |
 | 15239082 (At5g11550.1) | No hits by PSI-BLAST None from TAIR, PEDANT | 1EE4 | C |
 | 15228210 (At3g47660) | FYVE/PHD zinc finger RCC1 like domain Sugar transporter signature (PROSITE) | FYVE/PHD zinc finger; RCC1 like domain; PH domain | A (99.9% certainty); B (99% certainty); C |
 | Cytochrome P450 | 238 (TAIR GO) | 249 hits 256 hits | C or above D (50% certainty) or above |
 | Protein-kinase-like domain | 1037 hits (PEDANT/MatDB) 951 hits (TAIR GO) | 1,179 hits | C or above |
Alpha/beta hydrolase fold | Arabidopsis | 194 hits (PEDANT/MatDB, SCOP 3.65) | 340 hits 200 hits | C or above A |
 | Human | 69 hits (PEDANT/MatDB, SCOP c.69) | 1,086 hits 1,18 hits | C or above A |