From: A comparative proteomics resource: proteins of Arabidopsis thaliana
Pipeline | Focus area | Applications | Coverage |
---|---|---|---|
GeneQuiz | Sequence homology Function assignment | BLAST, FASTA, COILS, MaxHom, Prosite, Blocks, Predict Protein, Coils, Transmembrane helix, CAST. | 65 genomes |
PEDANT | Gene prediction Sequence homology Function assignment Fold assignment | BLAST, PSI-BLAST, HMMER, PREDATOR, Orpheus, BLIMPS, STRIDE. | 133 complete genomes, 91 partial genomes |
PAT | Sequence homology Function assignment Fold recognition Structure prediction | WU-BLAST, PSI-BLAST, 123D, HMMER | 103+ genomes, continuous expansion |