Skip to main content
Figure 3 | Genome Biology

Figure 3

From: The mosaic structure of the symbiotic plasmid of Rhizobium etliCFN42 and its relation to other symbiotic genome compartments

Figure 3

Comparison of predicted proteins from p42d with those from other genomes and SGCs. Bidirectional best hits (BDBHs) between p42d and other genomes are shown. The bars in all rows represent the percentage identity (number of identities/length of the alignment) of BDBHs between p42d and the indicated genome (see below for color code). The horizontal red line in each row indicates 50% of similarity. A color code is shown for each genome or compartment. (a) Different organisms: Bacillus subtilis (dark magenta); Brucella melitensis (yellow); Caulobacter crescentus (red); Escherichia coli K12 (light magenta), Methanobacterium thermoautotrophicum (dark purple), and Ralstonia solanacearum (purple). (b) A. tumefaciens C58 circular chromosome (white), linear chromosome (pale gray), pAT (gray), and pTi (dark gray). (c) B. japonicum USDA110 SGC (turquoise). (d) pNGR234a (blue green). (e) M. loti R7A SGC (green). (f) M. loti MAFF303099 SGC (dark blue), and the rest of the chromosome (light blue). (g) S. meliloti pSymA (pale yellow), pSymB (yellow), and the chromosome (dark yellow). (h) CDS distribution for p42d with the color codes for functional classes and the relevant regions as indicated in Figure 1.

Back to article page