Table 1 Overview of L1-TD based families
From: Identifying related L1 retrotransposons by analyzing 3' transduced sequences
Family id | L1 id (Chrom_number) | Gi | L1 5' start in Gi* | L1 end or end of transduced sequence in Gi* | Length of transduced sequence (nucleotides) | L1 length (nucleotides) | Parent element†| TSD | 5' inverted‡ |
|---|---|---|---|---|---|---|---|---|---|
1 | 2_4643 | 15294467 | 307978 | 311125 | 2,584 | 567 | Â | aaaaataaa | Â |
| Â | Un_953 | 15306878 | 184575 | 184856 | NA | 285 | Â | Â | Â |
| Â | Un_964 | 15306878 | 268932 | 269213 | NA | 285 | Â | Â | Â |
2 | 2_7114 | 15294791 | 255899 | 256304 | 265 | 141 | Â | taaaatgcagaaactag | Â |
| Â | 10_7718 | 15298903 | 2767966 | 2773393 | NA | 5,451 | Â | Â | Â |
| Â | 1_8235 | 15295669 | 348450 | 342868 | 160 | 5,449 | Â | aaataaatg | Â |
| Â | 1_8446 | 15295734 | 237379 | 231775 | 176 | 5,449 | Â | aaataaatg | Â |
| Â | 4_17987 | 15296429 | 154870 | 149448 | NA | 5,449 | Â | gattcagtgtag | Â |
3 | 2_17349 | 15296775 | 3661224 | 3663417 | 1,056 | 1,149 | Â | gaaaacccccatt | Y |
| Â | 8_15027 | 15300852 | 2440737 | 2440139 | NA | 602 | Â | Â | Y |
4 | 2_22677 | 15297650 | 495140 | 494449 | 237 | 440 | Â | gaaagtctcag | Â |
| Â | 12_173 | 13650683 | 155075 | 155558 | 244 | 241 | Â | aaaagtgtat | Â |
5 | 2_25220 | 15321353 | 1827382 | 1820496 | 869 | 6,028 | Â | aaagctgctatgc | Â |
| Â | X_13522 | 15310267 | 360475 | 354463 | NA | 6,027 | Y | gaaaatctataacctt | Â |
6 | 2_25509 | 15321375 | 1909492 | 1915693 | 181 | 6,029 | Â | aagagttcaagaccag | Â |
| Â | 7_87 | 12732805 | 21100 | 27115 | NA | 6,029 | Y | aaagaagtttacggat | Â |
7 | 3_1865 | 13643340 | 90808 | 92969 | 324 | 1,877 | Â | agaac [a/t]tctggtttctc | Y |
| Â | 15_6107 | 15301004 | 875067 | 868748 | 308 | 6,028 | Y | gaaagttttctc | Â |
| Â | 1_1921 | 15294432 | 1613642 | 1609714 | NA | 3,940 | Â | Â | Â |
8 | 3_9516 | 15294771 | 235402 | 237115 | 901 | 853 | Â | aaagaaaaatgcat | Y |
| Â | 3_8906 | 15294621 | 1207468 | 1206594 | NA | 888 | Â | Â | Â |
9 | 3_21623 | 15297547 | 436478 | 433456 | 1,346 | 1,666 | Â | aaaagaaaagaaaa | Â |
| Â | 3_21596 | 15297547 | 226036 | 226431 | NA | 385 | Â | Â | Â |
10 | 5_11657 | 15296062 | 51646 | 48476 | 290 | 2,898 | Â | aaaaagaaa | Â |
| Â | 7_871 | 14750593 | 827200 | 821606 | NA | 5,554 | Â | Â | Â |
11 | 6_4059 | 15299959 | 5480739 | 5478164 | 416 | 2,167 | Â | aaagaatgtgttttccc | Â |
| Â | 2_23164 | 15297755 | 259721 | 265735 | NA | 6,029 | Y | aagaaaaggtggcacat | Â |
| Â | 9_9971 | 15298967 | 4929487 | 4935489 | NA | 6,028 | Y | aagaaaatg | Â |
12 | 6_5918 | 15300319 | 1335113 | 1337115 | 216 | 1,786 | Â | aaagatatagta | Y |
| Â | 4_13249 | 15295387 | 360002 | 353916 | 74 | 6,029 | Y | aaaagcaatcttgc | Â |
13 | 9_6571 | 15298230 | 1090696 | 1086281 | 869 | 3,582 | Â | aaat [g/t]acccatcatta | Â |
| Â | 7_6559 | 15299368 | 436642 | 437412 | NA | 791 | Â | Â | Â |
14 | 9_10645 | 15299021 | 1612561 | 1606351 | 193 | 6,028 | Â | aaaagtttcag | Â |
| Â | 11_9728 | 15310185 | 12924346 | 12918249 | 80 | 6,028 | Y | aagaaggcatttcag | Â |
15 | 12_12007 | 15307682 | 13065 | 12422 | 501 | 142 | Â | aaaaaaatcccctt | Â |
| Â | 4_15129 | 15295977 | 549041 | 548937 | NA | 105 | Â | Â | Â |
16 | 13_482 | 14757668 | 240258 | 238846 | 47 | 1,353 | Â | aagtaggta | Â |
| Â | X_17433 | 15311159 | 890742 | 891945 | NA | 1,190 | Â | Â | Â |
17 | 13_5911 | 15302172 | 527379 | 521229 | 125 | 6,029 | Â | agaaaataattaacaa | Â |
| Â | 6_6642 | 15300443 | 3829157 | 3826437 | NA | 2,733 | Â | Â | Y |
18 | 13_10012 | 15303229 | 716846 | 718738 | 1,557 | 328 | Â | aaaaagaaaa | Â |
| Â | 22_2286 | 15319019 | 17887232 | 17888051 | NA | 810 | Â | aattggcctttga | Â |
| Â | Y_1832 | 15284289 | 141365 | 142172 | NA | 806 | Â | aattggcctttga | Â |
| Â | 22_2857 | 15319360 | 187476 | 187124 | NA | 347 | Â | Â | Â |
19 | 14_785 | 15299776 | 2701347 | 2702113 | 398 | 373 | Â | aaaaaaaaa | Â |
| Â | 13_6443 | 15302172 | 4825675 | 4827164 | NA | 1,507 | Â | Â | Â |
20 | 14_2523 | 15299963 | 1505451 | 1509166 | 176 | 3,539 | Â | aagagtaaa | Â |
| Â | 8_9380 | 15299954 | 317860 | 323975 | 99 | 6,029 | Y | gaaaggacaaaaagg | Â |
21 | 15_2689 | 15300281 | 2523261 | 2517133 | 133 | 6,029 | Â | aaaaagaaataag | Â |
| Â | 2_25800 | 15321383 | 1783087 | 1782231 | 113 | 745 | Â | tttaaaaaa | Y |
| Â | 18_6857 | 15306195 | 246156 | 240742 | NA | 5,438 | Â | Â | Â |
| Â | 18_6870 | 15306195 | 347799 | 353795 | NA | 6,027 | Y | Â | Â |
22 | 16_1147 | 15315724 | 78409 | 84467 | 50 | 6,028 | Â | aaga [g/c]ggttattctg | Â |
| Â | 5_5158 | 15294637 | 18076 | 12135 | NA | 5,964 | Â | Â | Â |
23 | 19_4956 | 15321727 | 603330 | 598565 | 2,883 | 1,910 | Â | aataaataaataaataa | Â |
| Â | 19_4990 | 15321727 | 762962 | 769106 | NA | 6,132 | Y | Â | Â |
24 | 20_1331 | 15304545 | 16832755 | 16832512 | 112 | 132 | Â | aagagacag | Â |
| Â | Y_3590 | 15284296 | 451303 | 453712 | NA | 2,382 | Â | Â | Y |
25 | X_11447 | 15310114 | 1438124 | 1444236 | 94 | 6,029 | Â | aaagaacacctggg | Â |
|  | 5_7396§ | 15295056 | 6999 | 483 | 500 | 6,029 | Y | aaaaatttactgtcta |  |
|  | 7_12643§ | 15300287 | 781397 | 774887 | 494 | 6,029 | Y | aaaaatttactgtcta |  |
| Â | 18_6119 | 15305941 | 1578214 | 1576721 | NA | 1,494 | Â | Â | Â |
| Â | 6_17369 | 15302692 | 2484984 | 2485139 | NA | 156 | Â | Â | Â |