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Table 2 The complete list of bHLH genes from Homo sapiens

From: Phylogenetic analysis of the human basic helix-loop-helix proteins

Sequence identification

Gene name

Family

Mouse ortholog(s)

Contigs

Chromosome localization

P50553

Hash1

Achaete-Scute a

Mash1

NT_009439.3

12q22-q23

Q99929

Hash2

Achaete-Scute a

Mash2

NT_009368.3

11p15.5

N024228

Hash3a *

Achaete-Scute b

Mash3

NT_024228.3

11p15.3

N004680

Hash3b *

Achaete-Scute b

?

NT_004680.3

1q31-q32

N009720

Hash3c *

Achaete-Scute b

?

NT_009720.3

12q23-q24

P15173

Myf4

MyoD

Myogenin

NT_004662.3

1q31-41

P23409

Myf6

MyoD

Myf6

NT_024473.2

12q21

P15172

Myf3

MyoD

MyoD

NT_009307.3

11p15.4

P13349

Myf5

MyoD

Myf5

NT_024473.2

12q21

N011269

E2A *

E12/E47

E2A

NT_011269.3

19p13.3

Q99081

TF12

E12/E47

TF12

NT_010289.3

15q21

P15884

TCF4

E12/E47

TCF4

NT_011059.5

18q21.1

P15884 D

TCF4b *

E12/E47

TCF4

NT_029427.1

12

P15923

TCF3

E12/E47

?

NT_011269.3

19p13.3

N008413

 

E12/E47

?

NT_008413.3

9p22-q22

Q92858

Hath1

Atonal

Math1

?

4q22

N029388

Hath5 *

Atonal

Math5

NT_029388.3

10q21-q26

N007816

Mist1 *

Mist

Mist1

NT_007816.3

7q21-q31

N011512

Oligo1 *

Oligo

Oligo 1

NT_011512.3

21q21-q22

Q9NZ14

Oligo2 *

Oligo

Oligo 2

?

?

N025741

Oligo3 *

Oligo

Oligo 3

NT_025741.3

6q22-q24

N030199

Beta3a *

Beta3

Beta3

NT_030199.1

8q21

N011333

Beta3b *

Beta3

Q9H494

NT_011333.4

20p11-q13

Q9H2A3

Neurogenin2

Neurogenin

Math4a

NT_022859.3

4

N024089

Hath4b

Neurogenin

Math4b

NT_024089.3

10q21.3

Q92886

NDF3

Neurogenin

NDF3

NT_007091.3

5q23-Q31

N009563

Hath3 *

NeuroD

Math3

NT_009563.3

12q13-q14

N007819

Hath2 *

NeuroD

Math2

NT_007819.6

7p14-p15

Q15784

NDF2

NeuroD

NDF2

NT_010685.3

17q12

Q13562

NDF1

NeuroD

NDF1

NT_005272.3

2q32

N010356a

Mesp1 *

Mesp

?

NT_010356.6

15q25-q26

N010356b

Mesp2 *

Mesp

?

NT_010356.6

15q25-q26

N010356c

Mesp3 *

Mesp

?

NT_010356.6

15q25-q26

N015926

Mesp4 *

Mesp

pMeso1

NT_015926.3

2p24

N015805

Hath6 *

Net

Math6

NT_015805.6

2p11-q24

N005204a

MyoR1 *

MyoR

Pod1

NT_005204.6

2p21-p25

N008253

MyoR2 *

MyoR

MyoR

NT_008253.3

8q13

N005204b

MyoR3 *

MyoR

?

NT_005204.6

2p21-p25

N008166

MyoR4 *

MyoR

?

NT_008166.3

8q13-q22

Q9HC25

P48

PTFa

PTF1

NT_008895.6

10p12-q22

N007918

PTFb *

PTFb

?

NT_007918.6

7p15-p21

O96004

ehand

Hand

eHand

NT_026280.4

5q33

O95300

dHand

Hand

dHand

NT_006257.3

4q31-q33

Q15672

twist

Twist

Twist

NT_007918.3

7p21

N011493

paraxis *

Paraxis

paraxis

NT_011493.3

20

Q02577

NSCL-2

NSCL

Hen2

NT_021883.3

1p11-p12

Q02575

NSCL-1

NSCL

Hen1

NT_004406.3

1q22

Q16559

Tal2

SCL

Tal2

NT_008470.3

9q31

P17542

Tal1

SCL

Tal1

NT_004701.3

1p32

P12980

Lyl

SCL

Lyl1+Lyl2

NT_011247.3

19p13.2

Q01664

AP4

AP4

AP4

NT_015360.3

19p13

Q99583

Mnt

Mnt

Mnt

NT_010692.3

17p13.3

Q14582

Mad4

Mad

Mad4

NT_022865.3

4p16.3

Q9H7H9

Mad4b *

Mad

?

NT_022865.3

4p16.3

P50539

Mxi1

Mad

Mxi1

NT_024048.3

10q25

Q05195

Mad1

Mad

Mad1

NT_005420.3

2p12-p13

AAH00745

Mad3

Mad

Mad3

?

?

P25912

Max

Max

Max

NT_025892.3

14q23

P04198

N-Myc

Myc

N-Myc

NT_026240.1

2p24.1

P01106

C-Myc

Myc

C-Myc

NT_008012.3

8q24

P12524

L-Myc1

Myc

L-Myc

NT_004893.3

1p34

P12525

L-Myc2

Myc

?

NT_011762.3

Xq22-q23

N011572

L-Myc3 *

Myc

?

NT_011572.3

Xq27

O43792

SRC1

SRC

SRC1

NT_005204.3

2p22-p25

Q15596

SRC2

SRC

SRC2

NT_023676.3

8p22-q21

Q9Y6Q9

SRC3

SRC

SRC3

NT_011371.3

20q12

O75030

MITF

MITF

MITF

NT_005510.3

3p12-p14

P19532

TFE3

MITF

TFE3

NT_011611.3

Xp11

P19484

TFEB

MITF

TFEB

NT_023409.3

6p21

O14948

TFEC1

MITF

TFEC

NT_026338.1

7

N009714

TFEC2 *

MITF

TFEC

NT_009714.3

12p11-q14

P36956

SREBP1

SREBP

SREBP1

NT_010657.3

17p11.2

Q12772

SREBP2

SREBP

SREBP2

NT_011520.3

22q13

P22415

USF1

USF

USF1

NT_026219.3

1q22-q23

Q15853

USF2

USF

USF2

NT_011294.3

19q13

N009711

USF2b *

USF

USF2

NT_009711.6

12

Q9NP71

MLXa

MLX

MLX

NT_023557.3

7q11

Q9HAP2

Mondoa

MLX

?

?

12q21

Q9UH92

TF4a *

TF4

TF4

NT_010771.3

17q21.1

N005106

TF4b *

TF4

?

NT_005106.6

2p24-q36

N005420

Figa

Figa

Figa

NT_005420.3

2p13-p24

O00327

Bmal1

Bmal

Bmal1

NT_017854.3

11p15

Q9NYQ5

Bmal2

Bmal

?

NT_009622.3

12p11-p12

P27540

ARNT1

ARNT

ARNT1

NT_004811.3

1q21

Q9HBZ2

ARNT2

ARNT

ARNT2

NT_004811.6

1q21

O15516

clock1

Clock

clock

NT_029271.2

4q12

Q99743

NPAS2

Clock

NPAS2

NT_022171.6

2q13

Q16665

Hif1a

HIF

Hif1a

?

14q21-q24

Q99814

EPAS1

HIF

EPAS1

NT_029237.2

2p21-p16

O95262

Hif3a

HIF

Hif3a

NT_011166.6

19q13

Q99742

NPAS1

HIF/Sim/Trh

NPAS1

NT_011166.3

19q13

P81133

Sim1

Sim

Sim1

NT_019424.3

6q16-q21

Q14190

Sim2

Sim

Sim2

NT_011512.3

21q22.13

Q9H323

NPAS3

Trh

NPAS3

NT_010164.3

14q12-13

Q13804

AHR1

AHR

AHR

NT_007755.4

7p15

N016866

AHR2 *

AHR

?

NT_016866.3

5p15

Q9HAZ3

AHR3 *

AHR

?

NT_016866.3

5p15

N030106

AHR4 *

AHR

?

NT_030106.1

11q12-q13

Q9Y5J3

Herp2

Hey

Hey1

NT_023700.5

8q21

Q9UBP5

Herp1

Hey

Herp1

?

?

Q9NQ87

HEYL

Hey

?

NT_004893.5

1p34.3

Q9NQ87D

HEYLb *

Hey

?

NT_004893.5

1p34.3

N029966

Hey4 *

Hey

?

NT_029966.1

4

O14503

Dec1

E(spl)

Dec1

NT_005927.3

3p24-p26

BAB21502

Dec2

E(spl)

Dec2

NT_009471.3

12p11-p12

N029854

Hes5 *

E(spl)

Hes5

NT_029854.1

1p36

Q9BYEO

Hes7

E(spl)

Hes7

NT_010841.2

17p12-p13

N019265

Hes3 *

E(spl)

Hes3+BAA9469

NT_019265.6

1p36

Q9P2S3

Hes6 *

E(spl)

Hes6

NT_005139.6

2q36-q37

Q9Y543

Hes2

E(spl)

Hes2

NT_019265.6

1p36

Q9BYW0

Cha

E(spl)

?

NT_011333.4

20q11-q13

Q14469

Hes1

Hairy

Hes1

NT_005571.3

3q28-q29

Q9HCC6

Hes4

Hairy

?

NT_025635.5

1p36

P41134

Id1

Emc

Id1

NT_028392.4

20q11

N00599

Id2

Emc

?

NT_005999.3

3p21-q13

Q02363

Id2

Emc

Id2

NT_022194.3

2p25

Q02535

Id3

Emc

Id3

NT_004359.6

1p36

P47928

Id4

Emc

Id4

NT_027049.3

6p21-p22

Q9UH73

EBF1

Coe

Coe1

NT_007006.4

5q34

Q9BQW3

Coe2 *

Coe

?

NT_023666.3

8p21-p22

Q9H4W6

EBF3

Coe

?

NT_008818.6

10q25-q26

Q9NUB6

Coe4 *

Coe

?

?

20p11-p13

N010809

?

Orphan

?

NT_010809.6

17p13.3

Q9NX45

?

Orphan

?

NT_030131.1

13q12-q14

Q9H8R3

?

Orphan

?

NT_010194.6

15q14-q22

  1. Human sequences are identified using their accession number from Swissprot, Trembl, Smart or NCBI genome project sequences. In the latest case, the accession number is that of the contig which includes the bHLH gene. This accession number NT_XXXXXX.Y (XXXXXX identifies the contig and Y the version of the draft) has been abbreviated as NXXXXXXX. Gene names are those reported in protein databases or have been assigned by us on the basis of the orthology relationships with mouse genes (these names are marked by an asterisk). The identification of the contig in which each of the bHLH gene is included is also given. In a few cases (marked with a question mark), we were unable to retrieve, in the genome sequence, previously cloned genes. This may be due to the fact that these genes lie in still unsequenced regions of the genome, or to some limitations of the current version of BLAST (see text for details). Chromosomal localizations are given as reported in the NCBI human genome sequence database (LocusLink and/or OMIM [77,78]).